RNA–Protein interactions for RNA: ENST00000542848.5

PTPN6-219, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 5

Gene PTPN6, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-219	ENST00000542848	DUSP8	Q13202	625 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	NAB1	Q13506	487 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	CASP8	Q14790	479 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	SETDB1	Q15047	1291 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ACAP2	Q15057	778 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	PCBP2	Q15366	365 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	FAM83E	Q2M2I3	478 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	FBXL19-AS1	Q494R0	122 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	METTL2B	Q6P1Q9	378 aa	Known RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	MYLK4	Q86YV6	388 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	TGIF2LY	Q8IUE0	185 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	RELL1	Q8IUW5	271 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	GSPT2	Q8IYD1	628 aa	Known RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ZNF441	Q8N8Z8	693 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	FBF1	Q8TES7	1133 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	DOK4	Q8TEW6	326 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	FAM222B	Q8WU58	562 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	DIO2	Q92813	273 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ZNF597	Q96LX8	424 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	JSRP1	Q96MG2	331 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	SECISBP2	Q96T21	854 aa	Known RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	SLC6A15	Q9H2J7	730 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	PCNX3	Q9H6A9	2034 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ACTR8	Q9H981	624 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	SNX15	Q9NRS6	342 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	RASSF1	Q9NS23	344 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	CCM2L	Q9NUG4	571 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ZNF358	Q9NW07	568 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	CRIM1	Q9NZV1	1036 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	ST6GALNAC2	Q9UJ37	374 aa		10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN6-219	ENST00000542848	C15orf38-AP3S2	A0A0A6YYH1	394 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	GLOD5	A6NK44	160 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	IL2RA	P01589	272 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	HPN	P05981	417 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	NR2F6	P10588	404 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PIK3R1	P27986	724 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	UQCRC1	P31930	480 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	MAGEA4	P43358	317 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PIK3CG	P48736	1102 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TRPC1	P48995	793 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TMED10	P49755	219 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	ASCL1	P50553	236 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	RPP38	P78345	283 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CRYZ	Q08257	329 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	FUT7	Q11130	342 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	SNTB1	Q13884	538 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	GTF2H2	Q13888	395 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	RPS6KA2	Q15349	733 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CPSF6	Q16630	551 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PFKFB4	Q16877	469 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	ACSF3	Q4G176	576 aa	Predicted RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	FLYWCH1	Q4VC44	716 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	HLA-DQA1	Q5Y7H0	255 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	GTF2H2C	Q6P1K8	395 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	POMZP3	Q6PJE2	187 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TRMT10C	Q7L0Y3	403 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CROCCP2	Q86T23	111 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PACS2	Q86VP3	889 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	NUDT13	Q86X67	352 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	LACC1	Q8IV20	430 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PM20D2	Q8IYS1	436 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CENPL	Q8N0S6	344 aa	Predicted RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	L3MBTL4	Q8NA19	623 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	RELL2	Q8NC24	303 aa	Predicted RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TNIP2	Q8NFZ5	429 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	WDR20	Q8TBZ3	569 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	KCTD4	Q8WVF5	259 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	RNASE6	Q93091	150 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TIMP4	Q99727	224 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	SH3GL2	Q99962	352 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	GPATCH1	Q9BRR8	931 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	ANGPTL4	Q9BY76	406 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	PRDM14	Q9GZV8	571 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CLEC4M	Q9H2X3	399 aa	Predicted RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	UBQLN3	Q9H347	655 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	IPPK	Q9H8X2	491 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	CXorf21	Q9HAI6	301 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	TNPO3	Q9Y5L0	923 aa	Known RBP	10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	NPFFR2	Q9Y5X5	522 aa		10.87	□□□□□ -0.67
PTPN6-219	ENST00000542848	HEATR5A	Q86XA9	2040 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848		A6NNC1	897 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	CDH16	O75309	829 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	TRAPPC6A	O75865	159 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	SEMA3D	O95025	777 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	KLHL2	O95198	593 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	LRAT	O95237	230 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	CLDN9	O95484	217 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	ACSL3	O95573	720 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	AIFM1	O95831	613 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	C2	P06681	752 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	GFAP	P14136	432 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	BMP5	P22003	454 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	DNASE1	P24855	282 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	SSTR4	P31391	388 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	CDK9	P50750	372 aa	Known RBP	10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	NRG3	P56975	720 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	FBXW4	P57775	412 aa		10.86	□□□□□ -0.67
PTPN6-219	ENST00000542848	DAZAP2	Q15038	168 aa	Predicted RBP	10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms