RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 LRRC14BA6NHZ5 514 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 LRRC10BA6NIK2 292 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 GOLGA8KD6RF30 607 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 F8W735 103 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 GOLGA8TH3BQL2 631 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PSMD3O43242 534 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TMCC2O75069 709 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 LDB3O75112 727 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TNFSF13O75888 250 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 VENTXO95231 258 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TGM6O95932 706 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TGFAP01135 160 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 HPNP05981 417 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 THBDP07204 575 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 COMTP21964 271 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CCND1P24385 295 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ADRA1DP25100 572 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 SERPINB3P29508 390 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 RPL22P35268 128 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CDK9P50750 372 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CCR8P51685 355 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 HSD17B7P56937 341 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 EEF1A1P68104 462 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 MYL5Q02045 173 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ID2Q02363 134 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TBL3Q12788 808 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CDH17Q12864 832 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 GPS1Q13098 491 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 NAE1Q13564 534 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 GGTLC2Q14390 218 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PDCD2Q16342 344 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PARP6Q2NL67 630 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 EEF1A1P5Q5VTE0 462 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 NIPAL1Q6NVV3 410 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CDPF1Q6NVV7 123 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 SHISA2Q6UWI4 295 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 SBSNQ6UWP8 590 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 MBOAT1Q6ZNC8 495 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 APTXQ7Z2E3 356 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 LRRC56Q8IYG6 542 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 UBQLNLQ8IYU4 475 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 RCOR2Q8IZ40 523 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PRELID2Q8N945 189 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 SNX31Q8N9S9 440 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 FAM83FQ8NEG4 500 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 OR14A16Q8NHC5 309 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 OR14L1PQ8NHC6 308 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 LILRB1Q8NHL6 650 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 GIMAP7Q8NHV1 300 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ACTL9Q8TC94 416 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CCT6BQ92526 530 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 NTNG2Q96CW9 530 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 SPACA9Q96E40 222 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF845Q96IR2 970 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 RILPQ96NA2 401 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ZFP3Q96NJ6 502 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PPP1R2P1Q96PQ5 205 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 FAM129AQ9BZQ8 928 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ACSS3Q9H6R3 686 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 BARX1Q9HBU1 254 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CHRAC1Q9NRG0 131 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 TEX10Q9NXF1 929 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 NOP53Q9NZM5 478 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 ZIM2Q9NZV7 527 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 AMFRQ9UKV5 643 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CNOT11Q9UKZ1 510 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 PPIEQ9UNP9 301 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 MRPS33Q9Y291 106 aaKnown RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 CHCHD2Q9Y6H1 151 aaPredicted RBP4.31□□□□□ -1.72
LIMS1-214ENST00000542845 MED12Q93074 2177 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 FREM1Q5H8C1 2179 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 SYCE3A1L190 88 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CTAGE15A4D2H0 777 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 FRG2CA6NGY1 282 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 C4orf51C9J302 202 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 APOC4-APOC2K7ER74 178 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PLOD2O00469 737 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 TP53I11O14683 189 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 TRIM3O75382 744 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ETHE1O95571 254 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 ACTL6AO96019 429 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 APOC2P02655 101 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PTMAP06454 111 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 F7P08709 466 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 DANCRP0C864 163 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CPN1P15169 458 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 NPPBP16860 134 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CCKARP32238 428 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 RBMXP38159 391 aaKnown RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 GRIA1P42261 906 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 RAB38P57729 211 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 FBXW4P57775 412 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 LOXL1Q08397 574 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 PIN1Q13526 163 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-214ENST00000542845 DOC2AQ14183 400 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CSHL1Q14406 222 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 RPS6KA1Q15418 735 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CARTPTQ16568 116 aa4.3□□□□□ -1.72
LIMS1-214ENST00000542845 CYP1B1Q16678 543 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms