RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SLAMF1Q13291 335 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 PTGES3Q15185 160 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 OCLNQ16625 522 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 EOGTQ5NDL2 527 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TNFAIP8L2Q6P589 184 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 AHSA2Q719I0 299 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 VASH1Q7L8A9 365 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 SLC46A3Q7Z3Q1 461 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 MMP21Q8N119 569 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 C2orf73Q8N5S3 287 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 FAM174AQ8TBP5 190 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TM4SF19Q96DZ7 209 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SMIM10Q96HG1 83 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SH3YL1Q96HL8 342 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 TRNT1Q96Q11 434 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 C17orf62Q9BQA9 187 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 MKRN2Q9H000 416 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 SERHL2Q9H4I8 314 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 AKIP1Q9NQ31 210 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 ZCCHC3Q9NUD5 404 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 CCDC59Q9P031 241 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 SCHIP1Q9P0W5 487 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 REV1Q9UBZ9 1251 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 OSGIN1Q9UJX0 560 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 DGKBQ9Y6T7 804 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3DA0A087WVF3 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3IA0A087WXS9 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3EA0A087X179 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3KA0A087X1G2 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 A6NCN8 305 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3FA6NER0 549 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3LB9A6J9 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 FFAR1O14842 300 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 AQP9O43315 295 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 PROM1O43490 865 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 CNOT3O75175 753 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 UGT2B17O75795 530 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 FADS2O95864 444 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3HP0C7X1 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 NR2F1P10589 423 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 HNRNPA2B1P22626 353 aaKnown RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 RHAGQ02094 409 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 PIGFQ07326 219 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TP53BP2Q13625 1128 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3GQ6DHY5 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3CQ6IPX1 549 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 C19orf48Q6RUI8 117 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 GDPGP1Q6ZNW5 385 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 USP43Q70EL4 1123 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 CCDC103Q8IW40 242 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 TBC1D3Q8IZP1 549 aaPredicted RBP9.31□□□□□ -0.92
SS18-205ENST00000542420 KBTBD8Q8NFY9 601 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 OR9Q2Q8NGE9 314 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SIPA1Q96FS4 1042 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SERINC2Q96SA4 455 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 ARHGDIGQ99819 225 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 IGFLR1Q9H665 355 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 SLC25A19Q9HC21 320 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 FGF22Q9HCT0 170 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 RASSF1Q9NS23 344 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 RLIMQ9NVW2 624 aa9.31□□□□□ -0.92
SS18-205ENST00000542420 NINQ8N4C6 2090 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 A0A1W2PR48 441 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 LRRC72A6NJI9 287 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 OR5K4A6NMS3 321 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 TMX2-CTNND1H3BSU7 103 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 AIFM1O95831 613 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 GASTP01350 101 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 GUSBP08236 651 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 OR12D1P0DN82 309 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 CD36P16671 472 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 TNFRSF1BP20333 461 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PRKAR1BP31321 381 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 IFNA8P32881 189 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 BUD31P41223 144 aaPredicted RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 CTSKP43235 329 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 MAP2K4P45985 399 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 LIMK1P53667 647 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 SUZ12Q15022 739 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 NCF4Q15080 339 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 TMEM44Q2T9K0 475 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ENTPD8Q5MY95 495 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 C1orf94Q6P1W5 598 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ASPGQ86U10 573 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 STX19Q8N4C7 294 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 OR8J1Q8NGP2 316 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 LCN9Q8WX39 176 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ZNF681Q96N22 645 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 CTRCQ99895 268 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 NXF2Q9GZY0 626 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 ABCG4Q9H172 646 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 MMP27Q9H306 513 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 SLC28A3Q9HAS3 691 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PCDH10Q9P2E7 1040 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 A4GNTQ9UNA3 340 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ERGIC3Q9Y282 383 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ZNF780BQ9Y6R6 833 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 J3KTA2 159 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ZW10O43264 779 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 FOXD2O60548 495 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms