RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TGFBR3LH3BV60 316 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 FCHO1O14526 889 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ANKRD28O15084 1053 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 NCF2P19878 526 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 CCL11P51671 97 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 GPR143P51810 404 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 PGDP52209 483 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 EFNA3P52797 238 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 KCNK10P57789 538 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 FOXL2P58012 376 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 PRR5P85299 388 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF267Q14586 743 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 MEP1AQ16819 746 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 PGS1Q32NB8 556 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ATP1A1-AS1Q5TC04 95 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 HLA-DQA1Q5Y7H0 255 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 H3F3CQ6NXT2 135 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 DND1Q8IYX4 353 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ARMC10Q8N2F6 343 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 TRIML2Q8N7C3 387 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 APCDD1LQ8NCL9 501 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 DNAJB8Q8NHS0 232 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 RFWD2Q8NHY2 731 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 NUBPLQ8TB37 319 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 NCLNQ969V3 563 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC25A23Q9BV35 468 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 CNPPD1Q9BV87 410 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 EPN3Q9H201 632 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 EPS8L2Q9H6S3 715 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ADAM21Q9UKJ8 722 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 EXO1Q9UQ84 846 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF451Q9Y4E5 1061 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 IGHV3-20A0A0C4DH32 117 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 CFLARO15519 480 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 DDAH2O95865 285 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 IGKV3-11P04433 115 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 PGRP06401 933 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 KRT16P08779 473 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 POLR2JP52435 117 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 TXNL4AP83876 142 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 MAPRE2Q15555 327 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 ABHD17BQ5VST6 288 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 ZCCHC12Q6PEW1 402 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 ISLR2Q6UXK2 745 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC15A4Q8N697 577 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 HORMAD2Q8N7B1 307 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 OR7A2PQ8NGA2 310 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 PSMA8Q8TAA3 256 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF721Q8TF20 911 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 TP53INP1Q96A56 240 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 PPWD1Q96BP3 646 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 GLIPR2Q9H4G4 154 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 MAT2BQ9NZL9 334 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF639Q9UID6 485 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 BTNL2Q9UIR0 455 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 CROCCQ5TZA2 2017 aa16.31■□□□□ 0.2
CLSTN3-210ENST00000540931 SCN2AQ99250 2005 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 CAPN14A8MX76 684 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 LAMP1P11279 417 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 POLE2P56282 527 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNHIT3Q15649 155 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 FAM174BQ3ZCQ3 159 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 VPS26BQ4G0F5 336 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF628Q5EBL2 1059 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 TCTN3Q6NUS6 607 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 TMEM64Q6YI46 380 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 RPS19BP1Q86WX3 136 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 GPALPP1Q8IXQ4 340 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 MMP21Q8N119 569 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 CPSF7Q8N684 471 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 KRTCAP2Q8N6L1 136 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 SUN3Q8TAQ9 357 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 SMAD5Q99717 465 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 RNF32Q9H0A6 362 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 OR10A5Q9H207 317 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 DDX18Q9NVP1 670 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 C19orf53Q9UNZ5 99 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 ERVK-19Q9WJR5 959 aa16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 YARS2Q9Y2Z4 477 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-210ENST00000540931 COL6A6A6NMZ7 2263 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 TRBV11-1A0A0K0K1C0 115 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 WASHC1A8K0Z3 465 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SNX3O60493 162 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SHOX2O60902 331 aaPredicted RBP16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 CASRP41180 1078 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 MAGEA8P43361 318 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 NRG3P56975 720 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC37A1P57057 533 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 UFM1P61960 85 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 RNF4P78317 190 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 MPEG1Q2M385 716 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 TMEM198Q66K66 360 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 TAGAPQ8N103 731 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SHISA5Q8N114 240 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 OR2L13Q8N349 312 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 OR56A1Q8NGH5 318 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC22A8Q8TCC7 542 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 SFXN5Q8TD22 340 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 UCN3Q969E3 161 aa16.29■□□□□ 0.2
CLSTN3-210ENST00000540931 ELP4Q96EB1 424 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms