RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 CNIH2Q6PI25 160 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 FBXO46Q6PJ61 603 aaPredicted RBP19.2■□□□□ 0.66
TMEM260-203ENST00000539559 USP34Q70CQ2 3546 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 LHFPL3Q86UP9 236 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 SLC9A6Q92581 669 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 EXOSC8Q96B26 276 aaKnown RBP19.2■□□□□ 0.66
TMEM260-203ENST00000539559 LMLNQ96KR4 655 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 CPEB1Q9BZB8 566 aaKnown RBP19.2■□□□□ 0.66
TMEM260-203ENST00000539559 MCOLN1Q9GZU1 580 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 SEC14L3Q9UDX4 400 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 SLC25A13Q9UJS0 675 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 MAFFQ9ULX9 164 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 KIAA0355O15063 1070 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 CPEP16870 476 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 VIPR1P32241 457 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 FAPQ12884 760 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 GRIN2CQ14957 1233 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 CCDC85BQ15834 202 aaPredicted RBP19.2■□□□□ 0.66
TMEM260-203ENST00000539559 ZDHHC20Q5W0Z9 365 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 RFPL4BQ6ZWI9 263 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 RIPOR3Q96MK2 946 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 C5orf42Q9H799 3197 aa19.2■□□□□ 0.66
TMEM260-203ENST00000539559 LOC102723532A0A0G2JNH3 316 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 PRAMEF27A3QJZ7 478 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 FAAHO00519 579 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SLC28A2O43868 658 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 LALBAP00709 142 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SLC2A2P11168 524 aaPredicted RBP19.19■□□□□ 0.66
TMEM260-203ENST00000539559 IRS1P35568 1242 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 ARPC4P59998 168 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 TAP2Q03519 686 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 CNTN1Q12860 1018 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SNAPC1Q16533 368 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 CEP78Q5JTW2 689 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 UNC5DQ6UXZ4 953 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 C6orf120Q7Z4R8 191 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 Q8N402 240 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 GDPD1Q8N9F7 314 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 GLYATL1Q969I3 302 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SERHL2Q9H4I8 314 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 NDOR1Q9UHB4 597 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 LEFTY2O00292 366 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 DVL2O14641 736 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 TEX28O15482 410 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 TRAPPC2P0DI81 140 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 TRAPPC2BP0DI82 140 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 MAP2K3P46734 347 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 ZNF284Q2VY69 593 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SMUG1Q53HV7 270 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 HTR3DQ70Z44 454 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SLC5A11Q8WWX8 675 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 ARMC5Q96C12 935 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 YIPF4Q9BSR8 244 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 HDHD5Q9BXW7 423 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 ANKRA2Q9H9E1 313 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 A4GNTQ9UNA3 340 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 DIMT1Q9UNQ2 313 aaKnown RBP19.19■□□□□ 0.66
TMEM260-203ENST00000539559 PRKAB1Q9Y478 270 aa19.19■□□□□ 0.66
TMEM260-203ENST00000539559 SHISA3A0PJX4 238 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 FAM25AB3EWG3 89 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 FAM25CB3EWG5 89 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 FAM25GB3EWG6 89 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 FOXE1O00358 373 aaPredicted RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 HMGN4O00479 90 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 CASKO14936 926 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 ZNF780AO75290 641 aaPredicted RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TIMP2P16035 220 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 PTNP21246 168 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 ALAS2P22557 587 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 MLLT3P42568 568 aaPredicted RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 AVPR1BP47901 424 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 MLLT1Q03111 559 aaPredicted RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 IL18Q14116 193 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 BTBD16Q32M84 506 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 LCN1P1Q5VSP4 162 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TRMT11Q7Z4G4 463 aaKnown RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TRAPPC5Q8IUR0 188 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TRAM1L1Q8N609 369 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 CLDN22Q8N7P3 220 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 XAGE5Q8WWM1 108 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 UPRTQ96BW1 309 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 AP2M1Q96CW1 435 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 F2RL3Q96RI0 385 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TMED9Q9BVK6 235 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TBC1D17Q9HA65 648 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TESQ9UGI8 421 aaKnown RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 FBXW2Q9UKT8 454 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 K7ESM1 405 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 MEN1O00255 615 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 CTSLP07711 333 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 GIPRP48546 466 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 PRLHRP49683 370 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 POLR2LP62875 67 aaKnown RBP19.18■□□□□ 0.66
TMEM260-203ENST00000539559 ZNF628Q5EBL2 1059 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 CLEC12AQ5QGZ9 265 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 TRIQKQ629K1 86 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 HIST2H2AA3Q6FI13 130 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 NXPE4Q6UWF7 544 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 ZNF730Q6ZMV8 503 aa19.18■□□□□ 0.66
TMEM260-203ENST00000539559 C19orf18Q8NEA5 215 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms