RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PPIAP62937 165 aaKnown RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 MAP4K2Q12851 820 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 SPDYAQ5MJ70 313 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 C6orf163Q5TEZ5 329 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 TRIM46Q7Z4K8 759 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 SRRM1Q8IYB3 904 aaKnown RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 VWA5B2Q8N398 1253 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 OR7G1Q8NGA0 311 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 PAQR8Q8TEZ7 354 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 ADIPOR1Q96A54 375 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 TP53INP1Q96A56 240 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 GATA5Q9BWX5 397 aaPredicted RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 PARD6BQ9BYG5 372 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 TTTY12Q9BZ98 90 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 BRINP2Q9C0B6 783 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 IQCGQ9H095 443 aaKnown RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 PLSCR2Q9NRY7 297 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 SUCOQ9UBS9 1254 aaKnown RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 ZNF639Q9UID6 485 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 UTS2RQ9UKP6 389 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 NCKAP5O14513 1909 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 A0A1B0GTH9 108 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 FAM166BA8MTA8 275 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ESPNB1AK53 854 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 CDC40O60508 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
USP28-204ENST00000537642 TRIM13O60858 407 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 SPAG7O75391 227 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 CRCPO75575 148 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 UROSP10746 265 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DRD2P14416 443 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ABOP16442 354 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 PIGAP37287 484 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 PLGLB1Q02325 96 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 FOXO1Q12778 655 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DUSP8Q13202 625 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 EXOSC7Q15024 291 aaKnown RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 LTB4RQ15722 352 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 NTRK2Q16620 822 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 IMPG1Q17R60 797 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 SLC22A10Q63ZE4 541 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 CLEC6AQ6EIG7 209 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 TMEM64Q6YI46 380 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 GK5Q6ZS86 529 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 FAM47EQ6ZV65 393 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DOLPP1Q86YN1 238 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DND1Q8IYX4 353 aaKnown RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 TAGAPQ8N103 731 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 LRRC25Q8N386 305 aaPredicted RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 MREGQ8N565 214 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 SIMC1Q8NDZ2 872 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 FAM13CQ8NE31 585 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ADCY4Q8NFM4 1077 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 OR10G3Q8NGC4 313 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ITLN2Q8WWU7 325 aaPredicted RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 CTHRC1Q96CG8 243 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 FAM111AQ96PZ2 611 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DEFB127Q9H1M4 99 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ZDHHC11Q9H8X9 412 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 PROK2Q9HC23 129 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 RYDENQ9NUL5 291 aaKnown RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 TUBA8Q9NY65 449 aaPredicted RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 SLC17A7Q9P2U7 560 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 DTX4Q9Y2E6 619 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 CCL27Q9Y4X3 112 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 CHCHD2Q9Y6H1 151 aaPredicted RBP13.63□□□□□ -0.23
USP28-204ENST00000537642 ZNF780BQ9Y6R6 833 aa13.63□□□□□ -0.23
USP28-204ENST00000537642 ACOT7O00154 380 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 PDE9AO76083 593 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 CBX7O95931 251 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 ANXA4P09525 319 aaPredicted RBP13.62□□□□□ -0.23
USP28-204ENST00000537642 CREB1P16220 341 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 GPX3P22352 226 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 ALDH3A1P30838 453 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 ADORA2A-AS1P86434 159 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 PRAMEF20Q5VT98 475 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 HLA-DQA1Q5Y7H0 255 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 MTFR2Q6P444 385 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 RGS9BPQ6ZS82 235 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 SLC22A16Q86VW1 577 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 CCDC116Q8IYX3 515 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 FBXW8Q8N3Y1 598 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 TMEM251Q8N6I4 163 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 EXOSC8Q96B26 276 aaKnown RBP13.62□□□□□ -0.23
USP28-204ENST00000537642 PHF12Q96QT6 1004 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 MECRQ9BV79 373 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 TMEM109Q9BVC6 243 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 IL1RL2Q9HB29 575 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 BCAP29Q9UHQ4 241 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 CNOT11Q9UKZ1 510 aaKnown RBP13.62□□□□□ -0.23
USP28-204ENST00000537642 PTGDR2Q9Y5Y4 395 aa13.62□□□□□ -0.23
USP28-204ENST00000537642 FREM3P0C091 2139 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 AZIN1O14977 448 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 RSL1D1O76021 490 aaKnown RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 LRATO95237 230 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 PCSK2P16519 638 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 PTGS2P35354 604 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 GSTM5P46439 218 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 FBXW4P57775 412 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 MRPS35P82673 323 aaKnown RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 ZNF763Q0D2J5 394 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms