RNA–Protein interactions for RNA: ENST00000519553.1

PTPN12-213, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 3

Gene PTPN12, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-213	ENST00000519553	VIT	Q6UXI7	678 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	DLEU7	Q6UYE1	221 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ZNF600	Q6ZNG1	722 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ASRGL1	Q7L266	308 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ZPLD1	Q8TCW7	415 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	EEF2KMT	Q96G04	330 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ZNF560	Q96MR9	790 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	CCDC43	Q96MW1	224 aa	Known RBP	4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	SPATA13	Q96N96	652 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ACCS	Q96QU6	501 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ATP6V0B	Q99437	205 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	DCTPP1	Q9H773	170 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	ELL3	Q9HB65	397 aa	Predicted RBP	4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	IKZF3	Q9UKT9	509 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	KLHDC2	Q9Y2U9	406 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	AFF2	P51816	1311 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	DHX29	Q7Z478	1369 aa	Known RBP	4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	POGZ	Q7Z3K3	1410 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	RALGAPA1	Q6GYQ0	2036 aa		4.6	□□□□□ -1.67
PTPN12-213	ENST00000519553	IGHV3OR16-12	A0A075B7B8	117 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	DDX39A	O00148	427 aa	Known RBP	4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	THY1	P04216	161 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	P4HA1	P13674	534 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	BRCC3	P46736	316 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	CCL11	P51671	97 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	ZNF131	P52739	623 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	NLRP11	P59045	1033 aa	Known RBP	4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	CRMP1	Q14194	572 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	SLC22A6	Q4U2R8	563 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	ATAD3C	Q5T2N8	411 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	SEL1L2	Q5TEA6	688 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	ADCK1	Q86TW2	530 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	NAXD	Q8IW45	347 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	SLC22A18AS	Q8N1D0	253 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	MSANTD4	Q8NCY6	345 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	RBM18	Q96H35	190 aa	Known RBP	4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	C19orf43	Q9BQ61	176 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	CUTC	Q9NTM9	273 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	HMG20B	Q9P0W2	317 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	CIDEB	Q9UHD4	219 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	EMCN	Q9ULC0	261 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	NAALAD2	Q9Y3Q0	740 aa		4.59	□□□□□ -1.67
PTPN12-213	ENST00000519553	IGLV3-10	A0A075B6K4	115 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	MACROD2	A1Z1Q3	448 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ARPC1B	O15143	372 aa	Known RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	IGHV3-9	P01782	118 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ZNF18	P17022	549 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	HMGCL	P35914	325 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	NOV	P48745	357 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	RPL34	P49207	117 aa	Known RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	IST1	P53990	364 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	HMGCS2	P54868	508 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	MFAP2	P55001	183 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	GFPT1	Q06210	699 aa	Predicted RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	TCHHL1	Q5QJ38	904 aa	Predicted RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	HIST2H2AA3	Q6FI13	130 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ADAMTSL5	Q6ZMM2	481 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	RAPH1	Q70E73	1250 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	PEX5L	Q8IYB4	626 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	CHCHD4	Q8N4Q1	142 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	KLHL30-AS1	Q8NEE0	82 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	MRAP	Q8TCY5	172 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	CRYGN	Q8WXF5	182 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	CPXM1	Q96SM3	734 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ACAT2	Q9BWD1	397 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	GPR174	Q9BXC1	333 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ABCG4	Q9H172	646 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	PNN	Q9H307	717 aa	Known RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	NRN1	Q9NPD7	142 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	ERVK-18	Q9QC07	812 aa		4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	TDRKH	Q9Y2W6	561 aa	Known RBP	4.58	□□□□□ -1.68
PTPN12-213	ENST00000519553	PTPRU	Q92729	1446 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553		K7ERI5	159 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	SAP18	O00422	153 aa	Known RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	CYB561D2	O14569	222 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	NME2P1	O60361	137 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	KERA	O60938	352 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	MARCKS	P29966	332 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	HNRNPF	P52597	415 aa	Known RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	CLPP	Q16740	277 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	ZNF528	Q3MIS6	628 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	TIMM50	Q3ZCQ8	353 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	TAF3	Q5VWG9	929 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	BNIPL	Q7Z465	357 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	GPD1L	Q8N335	351 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	ARL14	Q8N4G2	192 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	CD177	Q8N6Q3	437 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	ZNF671	Q8TAW3	534 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	TBCK	Q8TEA7	893 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	GTSF1	Q8WW33	167 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	HIST1H2AC	Q93077	130 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	ZBED6CL	Q96FA7	236 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	NAP1L3	Q99457	506 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	TEX13A	Q9BXU3	409 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	RNF41	Q9H4P4	317 aa	Predicted RBP	4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	STARD5	Q9NSY2	213 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	NDUFA13	Q9P0J0	144 aa		4.57	□□□□□ -1.68
PTPN12-213	ENST00000519553	TRIM10	Q9UDY6	481 aa		4.57	□□□□□ -1.68

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