RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 DUSP2Q05923 314 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 MAP4K2Q12851 820 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 COX10Q12887 443 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ART3Q13508 389 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 CDSNQ15517 529 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 PRICKLE4Q2TBC4 344 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 OR52E8Q6IFG1 317 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 SLC48A1Q6P1K1 146 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 XKRXQ6PP77 449 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ZYG11AQ6WRX3 759 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 TMEM64Q6YI46 380 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 RNF111Q6ZNA4 994 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 GPRIN3Q6ZVF9 776 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 NCCRP1Q6ZVX7 275 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-215ENST00000519474 MRGPRGQ86SM5 289 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF441Q8N8Z8 693 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 SIMC1Q8NDZ2 872 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 PAQR8Q8TEZ7 354 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.62□□□□□ -1.031e-6■■■■■ 56.2
HDAC3-215ENST00000519474 ADIPOR1Q96A54 375 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 TP53INP1Q96A56 240 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 CTHRC1Q96CG8 243 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 APIPQ96GX9 242 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF681Q96N22 645 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 KCNA7Q96RP8 456 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 DMRTA2Q96SC8 542 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 FAM173AQ9BQD7 235 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ACPTQ9BZG2 426 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 TNFRSF12AQ9NP84 129 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 SACM1LQ9NTJ5 587 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 HEY2Q9UBP5 337 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF639Q9UID6 485 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 ITGB1BP2Q9UKP3 347 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 MEMO1Q9Y316 297 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 COL12A1Q99715 3063 aa8.62□□□□□ -1.03
HDAC3-215ENST00000519474 USP9XQ93008 2570 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-215ENST00000519474 TMEM238LA0A1B0GVL6 79 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 C2orf92A0A1B0GVN3 265 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 OR6C76A6NM76 312 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 TFECO14948 347 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 GLRA3O75311 464 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SNUPNO95149 360 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 ESRRBO95718 433 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 P04436 131 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 FBXO45P0C2W1 286 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 ESRRAP11474 423 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CPA3P15088 417 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 ABOP16442 354 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 KRT15P19012 456 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 GRNP28799 593 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 HMOX2P30519 316 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 PTGS2P35354 604 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 DNASE1L1P49184 302 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CASP6P55212 293 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 DNAJB13P59910 316 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 HMGCS1Q01581 520 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 BTKQ06187 659 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CSTF3Q12996 717 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SLC10A1Q14973 349 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 EBPQ15125 230 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 PRSS53Q2L4Q9 553 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 HYAL4Q2M3T9 481 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CCDC153Q494R4 210 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 GXYLT1Q4G148 440 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 TRMT12Q53H54 448 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 EMC4Q5J8M3 183 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 FAM180BQ6P0A1 224 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 C3P1Q6ZMU1 363 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 RGS9BPQ6ZS82 235 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SLC29A4Q7RTT9 530 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 ZNF808Q8N4W9 903 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 TMEM251Q8N6I4 163 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CCNYL1Q8N7R7 359 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 GBP7Q8N8V2 638 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 OR2W6PQ8NHA6 318 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 FAM57AQ8TBR7 257 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SLC22A8Q8TCC7 542 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 EPS8L3Q8TE67 593 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 AGAP11Q8TF27 550 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 C16orf78Q8WTQ4 265 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 NTNG2Q96CW9 530 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CCDC126Q96EE4 140 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 CNRIP1Q96F85 164 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 TTTY12Q9BZ98 90 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 WWTR1Q9GZV5 400 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 OR10A5Q9H207 317 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 ZDHHC11Q9H8X9 412 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 PPCSQ9HAB8 311 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 IL1RL2Q9HB29 575 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 MID1IP1Q9NPA3 183 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 OXSMQ9NWU1 459 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SIRT5Q9NXA8 310 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 TUBA8Q9NY65 449 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 SUCOQ9UBS9 1254 aaKnown RBP8.61□□□□□ -1.03
HDAC3-215ENST00000519474 MCM8Q9UJA3 840 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 PSME2Q9UL46 239 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 DLGAP4Q9Y2H0 992 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 N6AMT1Q9Y5N5 214 aa8.61□□□□□ -1.03
HDAC3-215ENST00000519474 NPFFR2Q9Y5X5 522 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms