RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GSRP00390 522 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOT2P00505 430 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CST1P01037 141 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 EGFP01133 1207 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFNA2P01563 188 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FTH1P02794 183 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SERPIND1P05546 499 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 H1F0P07305 194 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CA3P07451 260 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRNGP07510 517 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCNP07585 359 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSTA1P08263 222 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 F7P08709 466 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUDT17P0C025 328 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC35G4P0C7Q5 338 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMIM18P0DKX4 95 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPA8P0DM63 369 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CT45A8P0DMV1 189 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CT45A9P0DMV2 189 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAL4FP0DN26 164 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 UMPSP11172 480 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GP1BBP13224 206 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEACAM1P13688 526 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCNB1P14635 433 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 UQCRBP14927 111 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARSBP15848 533 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACADSP16219 412 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NAGAP17050 411 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOT1P17174 413 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOXB8P17481 243 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TNNI1P19237 187 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNF1AP20823 631 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTNP21246 168 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSTM3P21266 225 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCNOP22674 350 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CBLP22681 906 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACKR3P25106 362 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MPZP25189 248 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 AZGP1P25311 298 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 C21orf33P30042 268 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 BDKRB2P30411 391 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPH1P31943 449 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CASP14P31944 242 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 YWHABP31946 246 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 STX2P32856 288 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPL9P32969 192 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR1D2P34982 312 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CA8P35219 290 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SFTPDP35247 375 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RORAP35398 523 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTGER4P35408 488 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP5C1P36542 298 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 APOBEC1P41238 236 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MATKP42679 507 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC1A4P43007 532 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRATP43155 626 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRYBB2P43320 205 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEA9P43362 315 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACADSBP45954 432 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR4P46093 362 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GYG1P46976 350 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RFX3P48380 749 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP3CCP48454 512 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNJ3P48549 501 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCT3P49368 545 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCYT1AP49585 367 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOXA1P49639 335 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 COMPP49747 757 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FHITP49789 147 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TNFSF10P50591 281 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCAP31P51572 246 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCL11P51671 97 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 VAMP7P51809 220 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCNG1P51959 295 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC7A2P52569 658 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 THOP1P52888 689 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUDT6P53370 316 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLA2G16P53816 162 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IST1P53990 364 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP12AP54707 1039 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DVL1P1P54792 670 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GEMP55040 296 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLTPP55058 493 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH6P55285 790 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH12P55289 794 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN18P56856 261 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNK10P57789 538 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PROK1P58294 105 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DSCR9P59020 149 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 DAOAP59103 153 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEC61GP60059 68 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OSTNP61366 133 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB11AP62491 216 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPS6P62753 249 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPS15P62841 145 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAP62937 165 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 HERV-K104P63124 156 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSNK2BP67870 215 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FKBP1BP68106 108 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TUBA1BP68363 451 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms