RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 AAK1Q2M2I8 961 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 UGT3A2Q3SY77 523 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MSANTD1Q6ZTZ1 278 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TMPRSS9Q7Z410 1059 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 NRMQ8IXM6 262 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR6N2Q8NGY6 317 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 NELL2Q99435 816 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 SRA1Q9HD15 236 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 ERVK-11Q9UQG0 969 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 SRCAPQ6ZRS2 3230 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 NDUFV2P19404 249 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 PGFP49763 221 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 EIF4HQ15056 248 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 MICAQ29983 383 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 KLHL26Q53HC5 615 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 CPZQ66K79 652 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR4C11Q6IEV9 310 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TMEM207Q6UWW9 146 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 AMIGO1Q86WK6 493 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 PAQR7Q86WK9 346 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 SLC44A3Q8N4M1 653 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR5D16Q8NGK9 328 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TEX37Q96LM6 180 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 RTP3Q9BQQ7 232 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MED11Q9P086 117 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 SOX1O00570 391 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 NUAK1O60285 661 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 HTR1AP08908 422 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 HOXD8P13378 290 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 OSMP13725 252 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 HLA-FP30511 346 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 GRPRP30550 384 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 DPP6P42658 865 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ZNF81P51508 661 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 CRYZQ08257 329 aaKnown RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 BTBD16Q32M84 506 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SLC25A25Q6KCM7 469 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PLBD1Q6P4A8 553 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ARMCX6Q7L4S7 300 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PIAS4Q8N2W9 510 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 LRRC25Q8N386 305 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 PLA2G15Q8NCC3 412 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 RFT1Q96AA3 541 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 LHX3Q9UBR4 397 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ALPLP05186 524 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PGAM2P15259 253 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PORP16435 677 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 ATF4P18848 351 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 CA5AP35218 305 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SOX3P41225 446 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 MAN2A2P49641 1150 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 HOXC5Q00444 222 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 LRIT3Q3SXY7 679 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 NHSL2Q5HYW2 709 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PRAMEF17Q5VTA0 474 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 UBE2Q1Q7Z7E8 422 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 GPR149Q86SP6 731 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 CYB561A3Q8NBI2 242 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 OR2L3Q8NG85 312 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 OR2AJ1Q8NGZ0 328 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ZNF480Q8WV37 535 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 DNAJA4Q8WW22 397 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 ASB11Q8WXH4 323 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 FOXJ1Q92949 421 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 TCEAL4Q96EI5 215 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PTCHD1Q96NR3 888 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 CASD1Q96PB1 797 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PIGUQ9H490 435 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 CLMPQ9H6B4 373 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 RDH14Q9HBH5 336 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 NANSQ9NR45 359 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ENPP5Q9UJA9 477 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PCDHGB6Q9Y5F9 930 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 PCDHA9Q9Y5H5 950 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 A0A1W2PQL4 384 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 GRXCR2A6NFK2 248 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 WASH3PC4AMC7 463 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 KLF8O95600 359 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 LDOC1O95751 146 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 CTSAP10619 480 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 DRD2P14416 443 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SLC6A9P48067 706 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 DEFB103AP81534 67 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 CHAF1BQ13112 559 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 GAS6Q14393 721 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ATXN7L3Q14CW9 347 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 SLC5A12Q1EHB4 618 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 MICAL3Q7RTP6 2002 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SERPINA11Q86U17 422 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 GID4Q8IVV7 300 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 MFSD6LQ8IWD5 586 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 ASCC1Q8N9N2 400 aaKnown RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 PMM1Q92871 262 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SMARCD2Q92925 531 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 TSACCQ96A04 125 aaPredicted RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 S100A16Q96FQ6 103 aaKnown RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 POLDIP3Q9BY77 421 aaKnown RBP12.06□□□□□ -0.48
USP53-209ENST00000514665 C14orf105Q9NVL8 296 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 SPEF1Q9Y4P9 236 aa12.06□□□□□ -0.48
USP53-209ENST00000514665 L7N2F9 121 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms