RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNF695Q8IW36 515 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 KLHDC1Q8N7A1 406 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 GRHL3Q8TE85 626 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC39A13Q96H72 371 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 OR2AG1Q9H205 316 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 TDP1Q9NUW8 608 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 PRODH2Q9UF12 536 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 EVLQ9UI08 416 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 UTS2RQ9UKP6 389 aa10.76□□□□□ -0.69
LIMCH1-217ENST00000512946 CROCC2H7BZ55 1655 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A1W2PPL8 197 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 TISP43B9A030 160 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NFATC1O95644 943 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 MT-ND4LP03901 98 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 MRPS6P82932 125 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ITPRIPL2Q3MIP1 535 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 C6orf136Q5SQH8 315 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF678Q5SXM1 525 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 Q6ZNX1 250 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SHFQ7M4L6 423 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ZFAND4Q86XD8 727 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 GLIS3Q8NEA6 775 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NPLOC4Q8TAT6 608 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ADAMTS16Q8TE57 1224 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 PAQR8Q8TEZ7 354 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RSPRY1Q96DX4 576 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 TXNDC15Q96J42 360 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 LRR1Q96L50 414 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NIPSNAP3BQ9BS92 247 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CWH43Q9H720 699 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 FZD3Q9NPG1 666 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 MRPS23Q9Y3D9 190 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC22A23A1A5C7 686 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CDHR4A6H8M9 788 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SMAD9O15198 467 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 YKT6O15498 198 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CLIC3O95833 236 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CKMT1AP12532 417 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 OSMP13725 252 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RAC2P15153 192 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CNR1P21554 472 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RBMS1P29558 406 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CTNNB1P35222 781 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 GCGRP47871 477 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 TBCEQ15813 527 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 TATDN3Q17R31 274 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RNF151Q2KHN1 245 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CCNJQ5T5M9 372 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF704Q6ZNC4 412 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 GOLGA7Q7Z5G4 137 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 FAM58AQ8N1B3 248 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 KCNRGQ8N5I3 272 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NANPQ8TBE9 248 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CDKN2AIPNLQ96HQ2 116 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 OCSTAMPQ9BR26 566 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 PTGES2Q9H7Z7 377 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SRA1Q9HD15 236 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 DEC1Q9P2X7 70 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SALL4Q9UJQ4 1053 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 FBXL4Q9UKA2 621 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 EXO1Q9UQ84 846 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NUPL2O15504 423 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SPATA31D3P0C874 917 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SPATA31C1P0DKV0 1188 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RNH1P13489 461 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 GIPRP48546 466 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 RAB1AP62820 205 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CFAP77Q6ZQR2 320 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SPATA31D4Q6ZUB0 917 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 KLBQ86Z14 1044 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ARNTL2Q8WYA1 636 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF597Q96LX8 424 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 TMEM74Q96NL1 305 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 INTS6Q9UL03 887 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A1W2PPV4 95 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 SDHDO14521 159 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 LY6KQ17RY6 165 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 OR52E8Q6IFG1 317 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 KIAA0319LQ8IZA0 1049 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 OR2A12Q8NGT7 310 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 MRIQ9BWK5 157 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 NCDNQ9UBB6 729 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 GALPQ9UBC7 116 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 UGT2A1Q9Y4X1 527 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 CEPT1Q9Y6K0 416 aa10.75□□□□□ -0.69
LIMCH1-217ENST00000512946 FGF3P11487 239 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 RPL13AP40429 203 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 IRF9Q00978 393 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 FAM205BPQ63HN1 556 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 AWAT2Q6E213 333 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC35F3Q8IY50 421 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF679Q8IYX0 411 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 PXT1Q8NFP0 134 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SCARB1Q8WTV0 552 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 MARC2Q969Z3 335 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 RDH14Q9HBH5 336 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 TRAV18A0A075B6X5 111 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ARVCFO00192 962 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 171.6 ms