RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CRY2Q49AN0 593 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 SMUG1Q53HV7 270 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 C9orf152Q5JTZ5 239 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC183Q5T5S1 534 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 C8orf74Q6P047 294 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ENPP7Q6UWV6 458 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NLRP9Q7RTR0 991 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ANKRD33Q7Z3H0 272 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CROCCP3Q8IVE0 287 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ELMOD1Q8N336 334 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 RNF10Q8N5U6 811 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 TRIML2Q8N7C3 387 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ZNF713Q8N859 430 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 ZNRF1Q8ND25 227 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 OR8H1Q8NGG4 311 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 OR8K1Q8NGG5 319 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NRBF2Q96F24 287 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 C16orf74Q96GX8 76 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 SNF8Q96H20 258 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ALS2CR12Q96Q35 445 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ALKBH7Q9BT30 221 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 SPZ1Q9BXG8 430 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 UPF3BQ9BZI7 483 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 ZSCAN16Q9H4T2 348 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 DBNDD1Q9H9R9 158 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ELL3Q9HB65 397 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 TMEM165Q9HC07 324 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 MRGBPQ9NV56 204 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TMOD3Q9NYL9 352 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TMEM9Q9P0T7 183 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CIDEBQ9UHD4 219 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ATPIF1Q9UII2 106 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 FBXL5Q9UKA1 691 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCPG1Q9ULG6 757 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCL27Q9Y4X3 112 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NCOA3Q9Y6Q9 1424 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 HIVEP2P31629 2446 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 MAPK8IP3Q9UPT6 1336 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 IGHV3-35A0A0C4DH35 117 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 A0A1W2PPW3 197 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TRBC2A0A5B9 178 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TRIM64A6NGJ6 449 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TRIM64BA6NI03 449 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NEDD8-MDP1E9PL57 170 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 H7C0S8 307 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NDC80O14777 642 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 LIN7AO14910 233 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 BIRC5O15392 142 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 YKT6O15498 198 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 EMC8O43402 210 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 SULT1B1O43704 296 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 DKC1O60832 514 aaKnown RBP eCLIP1.64□□□□□ -2.15
NUP54-208ENST00000508604 FYNP06241 537 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ZFYP08048 801 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 OR52Z1P0C646 297 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC166P0CW27 439 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 GZMAP12544 262 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 POLR2EP19388 210 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 S100A1P23297 94 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CTNNA1P35221 906 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 RANBP1P43487 201 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ASMTP46597 345 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 RAD23AP54725 363 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 HSD17B7P56937 341 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 POLR2FP61218 127 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 RBPJQ06330 500 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NCBP1Q09161 790 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 DYNC1I2Q13409 638 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 BTG3Q14201 252 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 NFE2L1Q14494 772 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 SPCS2Q15005 226 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 WDR43Q15061 677 aaKnown RBP eCLIP1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC153Q494R4 210 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CAVIN4Q5BKX8 364 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 KRBOX4Q5JUW0 171 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 C1orf141Q5JVX7 400 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TATDN1Q6P1N9 297 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PLBD1Q6P4A8 553 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ANGPTL8Q6UXH0 198 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 LRRC31Q6UY01 552 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NCCRP1Q6ZVX7 275 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 NANOGNBQ7Z5D8 188 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 SPATA24Q86W54 205 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC50Q8IVM0 306 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC83Q8IWF9 413 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ANKRD13CQ8N6S4 541 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 PI4KAP1Q8N8J0 262 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 POMGNT2Q8NAT1 580 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ZNF397Q8NF99 534 aaPredicted RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 CCDC148Q8NFR7 591 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 OR6J1Q8NGC5 347 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V0A1Q93050 837 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 P2RX5Q93086 422 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V1E2Q96A05 226 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 VPS33AQ96AX1 596 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 COG3Q96JB2 828 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 FER1L6-AS2Q96M78 137 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 RBM14Q96PK6 669 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 TECTBQ96PL2 329 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TSGA13Q96PP4 275 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms