RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 BPIFB3P59826 476 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 MYBPC1Q00872 1141 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 C9orf66Q5T8R8 295 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 WDR25Q64LD2 544 aaPredicted RBP3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 EMBQ6PCB8 327 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 FAM159AQ6UWV7 190 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 DPY19L2P2Q6ZN68 376 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMEM26Q6ZUK4 368 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMUB2Q71RG4 321 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 LUZP1Q86V48 1076 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 PYROXD2Q8N2H3 581 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 Q8N377 158 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 ZNF485Q8NCK3 441 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 ANKRD20A12PQ8NF67 263 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 BEST4Q8NFU0 473 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RASL10AQ92737 203 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 C14orf79Q96F83 325 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 SAMD8Q96LT4 415 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 KCNK16Q96T55 309 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 PSMB7Q99436 277 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RBM24Q9BX46 236 aaKnown RBP3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RAB11FIP5Q9BXF6 653 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RAB17Q9H0T7 212 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMEM231Q9H6L2 316 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 TAS2R16Q9NYV7 291 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 PAK5Q9P286 719 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 SEC14L4Q9UDX3 406 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 MIOXQ9UGB7 285 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 KLK13Q9UKR3 277 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 ZNF346Q9UL40 294 aaKnown RBP3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 SLC9A8Q9Y2E8 581 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 A0A0A6YYD4 124 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 A0A1B0GU03 582 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 A0A1W2PPR1 153 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 K7ERI5 159 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 EI24O14681 340 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 BUB1O43683 1085 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 IGHV3-13P01766 116 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 FCGR3AP08637 254 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 GP9P14770 177 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 PPP2R1BP30154 601 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 MAT2AP31153 395 aaKnown RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 TRIM23P36406 574 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 MAGEA4P43358 317 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 GSK3BP49841 420 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 SLC7A2P52569 658 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 SLC26A5P58743 744 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 GMFBP60983 142 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 SNX1Q13596 522 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 SMC1AQ14683 1233 aaKnown RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 ANKRD55Q3KP44 614 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF528Q3MIS6 628 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 LIPKQ5VXJ0 399 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF841Q6ZN19 808 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 LRRC49Q8IUZ0 686 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 RNF148Q8N7C7 305 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 C17orf47Q8NEP4 570 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 MRPL38Q96DV4 380 aaKnown RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 CPXM1Q96SM3 734 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 C19orf43Q9BQ61 176 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 NDUFAF3Q9BU61 184 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 NMNAT2Q9BZQ4 307 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 TRIM6Q9C030 488 aaPredicted RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 IL1RL2Q9HB29 575 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 NRN1Q9NPD7 142 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 SOHLH2Q9NX45 425 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 CIDEBQ9UHD4 219 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 IL20RAQ9UHF4 553 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 BCAP29Q9UHQ4 241 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 EMCNQ9ULC0 261 aa3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 MTF2Q9Y483 593 aaPredicted RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 MYH14Q7Z406 1995 aaKnown RBP3.27□□□□□ -1.89
HMGB1P28-201ENST00000507778 IGHV3-16A0A0C4DH30 117 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 CYB561D2O14569 222 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 PI15O43692 258 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GALR3O60755 368 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 SEMA4FO95754 770 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 MT-ND1P03886 318 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 HCKP08631 526 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GHRP10912 638 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 HSD17B1P14061 328 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 RPA1P27694 616 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GABPB1Q06547 395 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 PDIA5Q14554 519 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 KARSQ15046 597 aaKnown RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 INAQ16352 499 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 CCL14Q16627 93 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 TMEM44Q2T9K0 475 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 REP15Q6BDI9 236 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 RAET1GQ6H3X3 334 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 IRGCQ6NXR0 463 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 ARMCX5Q6P1M9 558 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 ABRAXAS1Q6UWZ7 409 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 ISLR2Q6UXK2 745 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 MOB2Q70IA6 237 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 TIPARPQ7Z3E1 657 aaKnown RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GOLGA7Q7Z5G4 137 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 SLC47A2Q86VL8 602 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 RANBP3LQ86VV4 465 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 AMZ2Q86W34 360 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms