RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 RAB40ALP0C0E4 278 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 SDC1P18827 310 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 TPP2P29144 1249 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 XCR1P46094 333 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 RPS18P62269 152 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 ADRM1Q16186 407 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 FKBP9P1Q75LS8 142 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 NUDT13Q86X67 352 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 ZCCHC7Q8N3Z6 543 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 STT3BQ8TCJ2 826 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 POP5Q969H6 163 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 C11orf24Q96F05 449 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 PEX11GQ96HA9 241 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 METTL2AQ96IZ6 378 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 SPSB2Q99619 263 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 RBCK1Q9BYM8 510 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 DPH1Q9BZG8 443 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 RMND5AQ9H871 391 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 GPN2Q9H9Y4 310 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 MKKSQ9NPJ1 570 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 GPN3Q9UHW5 284 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 OAZ3Q9UMX2 235 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 VSTM2BA6NLU5 285 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 FAM220BPB1ANY3 271 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 TMPRSS11DO60235 418 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 PRMT3O60678 531 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 TFAP2AP05549 437 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 RAP2AP10114 183 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 WT1P19544 449 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 S100A3P33764 101 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 LIM2P55344 173 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 SHISA6Q6ZSJ9 500 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 ZC3H7AQ8IWR0 971 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 ITCHQ96J02 903 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 DCBLD2Q96PD2 775 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 MAPKAP1Q9BPZ7 522 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 CPPED1Q9BRF8 314 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 NPLQ9BXD5 320 aaPredicted RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 WDR54Q9H977 334 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 CLK4Q9HAZ1 481 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 SERHLQ9NQF3 203 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 AHSPQ9NZD4 102 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 KCMF1Q9P0J7 381 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 DAPP1Q9UN19 280 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 FARSAQ9Y285 508 aaKnown RBP18.18■□□□□ 0.5
CCM2-216ENST00000488727 SSUH2Q9Y2M2 353 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 PCDHGA6Q9Y5G7 932 aa18.18■□□□□ 0.5
CCM2-216ENST00000488727 GMNNO75496 209 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 PRSS23O95084 383 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 BMP10O95393 424 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 KLK1P06870 262 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 ZGLP1P0C6A0 271 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 EFNA3P52797 238 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 C21orf58P58505 322 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 RAE1P78406 368 aaKnown RBP18.17■□□□□ 0.5
CCM2-216ENST00000488727 OCA2Q04671 838 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 ERV3-1Q14264 604 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 DPY19L1Q2PZI1 675 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 MRM1Q6IN84 353 aaKnown RBP18.17■□□□□ 0.5
CCM2-216ENST00000488727 LAPTM4BQ86VI4 370 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 CALHM3Q86XJ0 350 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 SPACA3Q8IXA5 215 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 PRSS58Q8IYP2 241 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 KIAA1143Q96AT1 154 aaPredicted RBP18.17■□□□□ 0.5
CCM2-216ENST00000488727 PRPF18Q99633 342 aaKnown RBP18.17■□□□□ 0.5
CCM2-216ENST00000488727 BDH2Q9BUT1 245 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 CHID1Q9BWS9 393 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 GPR87Q9BY21 358 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 TGIF2Q9GZN2 237 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 PIF1Q9H611 641 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 SOX17Q9H6I2 414 aaPredicted RBP18.17■□□□□ 0.5
CCM2-216ENST00000488727 TCFL5Q9UL49 500 aa18.17■□□□□ 0.5
CCM2-216ENST00000488727 TMEM8BA6NDV4 472 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 FAM227AF5H4B4 570 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 MYF6P23409 242 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 RPS15P62841 145 aaKnown RBP18.16■□□□□ 0.5
CCM2-216ENST00000488727 PHC1P78364 1004 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 ACSM2AQ08AH3 577 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 SLAMF1Q13291 335 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 CNPY1Q3B7I2 92 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 FAM98BQ52LJ0 330 aaKnown RBP18.16■□□□□ 0.5
CCM2-216ENST00000488727 SPIN4Q56A73 249 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 ACSM2BQ68CK6 577 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 KDF1Q8NAX2 398 aaPredicted RBP18.16■□□□□ 0.5
CCM2-216ENST00000488727 CLHC1Q8NHS4 586 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 CSF3RQ99062 836 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 ADI1Q9BV57 179 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 IKZF5Q9H5V7 419 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 KAT8Q9H7Z6 458 aaKnown RBP18.16■□□□□ 0.5
CCM2-216ENST00000488727 KCND3Q9UK17 655 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 ADAM29Q9UKF5 820 aa18.16■□□□□ 0.5
CCM2-216ENST00000488727 RNF103-CHMP3A0A140T963 221 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 ELOVL7A1L3X0 281 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 OR2W5A6NFC9 320 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 H3BNH8 94 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 PDLIM1O00151 329 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 EFSO43281 561 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 PGM3O95394 542 aa18.15■□□□□ 0.5
CCM2-216ENST00000488727 H6PDO95479 791 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms