RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	COMMD6	Q7Z4G1	85 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	PACS2	Q86VP3	889 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	CLYBL	Q8N0X4	340 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	LRRC25	Q8N386	305 aa	Predicted RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF615	Q8N8J6	731 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF441	Q8N8Z8	693 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	TRPC4AP	Q8TEL6	797 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF483	Q8TF39	744 aa	Predicted RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF597	Q96LX8	424 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	TREX2	Q9BQ50	279 aa	Predicted RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	FAIM2	Q9BWQ8	316 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	BRINP2	Q9C0B6	783 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	PROK2	Q9HC23	129 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	SLC24A3	Q9HC58	644 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	FARSB	Q9NSD9	589 aa	Known RBP	11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	SPRR3	Q9UBC9	169 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	PCDHA9	Q9Y5H5	950 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	NPFFR2	Q9Y5X5	522 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	CACNA1D	Q01668	2161 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	MYO7B	Q6PIF6	2116 aa		11.44	□□□□□ -0.58
SREBF1-215	ENST00000487401	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401		A0A0G2JNJ9	132 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	C1orf226	A1L170	272 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	GOLGA6L10	A6NI86	522 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401		A8MT66	165 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	PPP6C	O00743	305 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	TRIM3	O75382	744 aa	Predicted RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	ERAL1	O75616	437 aa	Known RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	PDYN	P01213	254 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	CT62	P0C5K7	136 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	IGFBP2	P18065	325 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	CSNK2A2	P19784	350 aa	Predicted RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	MSX1	P28360	303 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	FEN1	P39748	380 aa	Known RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	MASP1	P48740	699 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	TFF3	Q07654	80 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	SLC48A1	Q6P1K1	146 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	LETMD1	Q6P1Q0	360 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	RPS27L	Q71UM5	84 aa	Known RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	DMRTC2	Q8IXT2	367 aa	Predicted RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	NEIL3	Q8TAT5	605 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	SPPL2A	Q8TCT8	520 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	MTBP	Q96DY7	904 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	SECISBP2	Q96T21	854 aa	Known RBP	11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF559	Q9BR84	538 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	SLC6A15	Q9H2J7	730 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	BRF2	Q9HAW0	419 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401		Q9UFV3	132 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	TRPS1	Q9UHF7	1281 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	BCAP29	Q9UHQ4	241 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	CFL2	Q9Y281	166 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	FAM215A	Q9Y5M1	114 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	ZNF780B	Q9Y6R6	833 aa		11.43	□□□□□ -0.58
SREBF1-215	ENST00000487401	OTOG	Q6ZRI0	2925 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	SUPT7L	O94864	414 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ESRRB	O95718	433 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	KRT6A	P02538	564 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	KRT6B	P04259	564 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ENDOU	P21128	410 aa	Known RBP	11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ECHS1	P30084	290 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	HSD17B3	P37058	310 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	KRT6C	P48668	564 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ALDH9A1	P49189	494 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	TRA2B	P62995	288 aa	Known RBP	11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	CLC	Q05315	142 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	MAP4K2	Q12851	820 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	MYBPH	Q13203	477 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	TOMM20	Q15388	145 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	SLC25A35	Q3KQZ1	300 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	RIPPLY2	Q5TAB7	128 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	CES4A	Q5XG92	561 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	TIFAB	Q6ZNK6	161 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	CDH24	Q86UP0	819 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	IFT20	Q8IY31	132 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ULK2	Q8IYT8	1036 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	PRR22	Q8IZ63	422 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	VWA5B2	Q8N398	1253 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	C1orf52	Q8N6N3	182 aa	Known RBP	11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	CDYL2	Q8N8U2	506 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	C17orf47	Q8NEP4	570 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ADIPOR1	Q96A54	375 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	TM4SF18	Q96CE8	201 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	KLHL29	Q96CT2	875 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	RILP	Q96NA2	401 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	C1QTNF3	Q9BXJ4	246 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	ANGPTL4	Q9BY76	406 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	PFDN4	Q9NQP4	134 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	VPS29	Q9UBQ0	182 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	KCNN3	Q9UGI6	736 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	CES1P1	Q9UKY3	287 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	NFU1	Q9UMS0	254 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401	PCDHGB3	Q9Y5G1	929 aa		11.42	□□□□□ -0.58
SREBF1-215	ENST00000487401		A0A1B0GTL3	188 aa		11.41	□□□□□ -0.58
SREBF1-215	ENST00000487401	HSPB2	A8KAH6	182 aa		11.41	□□□□□ -0.58
SREBF1-215	ENST00000487401	AHRR	A9YTQ3	701 aa		11.41	□□□□□ -0.58
SREBF1-215	ENST00000487401	KIF2A	O00139	706 aa	Predicted RBP	11.41	□□□□□ -0.58
SREBF1-215	ENST00000487401	MANBA	O00462	879 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms