RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GRIN2DO15399 1336 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SCN10AQ9Y5Y9 1956 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SIP14410 1827 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 TRBV5-5A0A0J9YX44 114 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 GOLGA8IPA6NC78 632 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 GOLGA8JA6NMD2 632 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 M0R296 226 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 O00370 1275 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 PES1O00541 588 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 OGTO15294 1046 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 PSMD3O43242 534 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 PRKNO60260 465 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 STX10O60499 249 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ATP1B1P05026 303 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 EDN1P05305 212 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 NUDT17P0C025 328 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 IQCF3P0C7M6 154 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 MCF2P10911 925 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CCL5P13501 91 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 KRT13P13646 458 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 LIFP15018 202 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 HOXB6P17509 224 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ARF4P18085 180 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 AXLP30530 894 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 SRD5A2P31213 254 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CASP14P31944 242 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 GTF2H1P32780 548 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CDKN1AP38936 164 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 LBX1P52954 281 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CLDN17P56750 224 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 SRP54P61011 504 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 SLC3A1Q07837 685 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 NCBP1Q09161 790 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 PPP1R8Q12972 351 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CDH18Q13634 790 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 SYCP1Q15431 976 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ARMCX4Q5H9R4 360 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 C1orf220Q5T0J3 134 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ATF7IP2Q5U623 682 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 LCN1P1Q5VSP4 162 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CAPRIN2Q6IMN6 1127 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 UGT3A1Q6NUS8 523 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ZCCHC12Q6PEW1 402 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 FOXL2NBQ6ZUU3 175 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ISCA2Q86U28 154 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CBWD2Q8IUF1 395 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 LRRC8AQ8IWT6 810 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 NAGSQ8N159 534 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 GBP7Q8N8V2 638 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 MRPL43Q8N983 215 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 POC1AQ8NBT0 407 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 OR7A2PQ8NGA2 310 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ZBTB9Q96C00 473 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ULK4Q96C45 1275 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CCDC51Q96ER9 411 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 C4orf45Q96LM5 186 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 DEFB118Q96PH6 123 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CDCA3Q99618 268 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 KRTAP1-5Q9BYS1 174 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 FAM49AQ9H0Q0 323 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 DDX47Q9H0S4 455 aaKnown RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 TSPYL1Q9H0U9 437 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ABCG4Q9H172 646 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 DPEP2Q9H4A9 486 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 C5orf66Q9H5L9 145 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 FAM118AQ9NWS6 357 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 NDUFA13Q9P0J0 144 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 ACTR3BQ9P1U1 418 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 C19orf25Q9UFG5 118 aaPredicted RBP3.61□□□□□ -1.83
PTCD3-216ENST00000487043 UBQLN2Q9UHD9 624 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 COQ4Q9Y3A0 265 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 PCDHGB1Q9Y5G3 927 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 CNTNAP2Q9UHC6 1331 aa3.61□□□□□ -1.83
PTCD3-216ENST00000487043 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TTC26A0AVF1 554 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TMEM129A0AVI4 362 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 MACROD2A1Z1Q3 448 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CCDC162PA2VCL2 907 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 LRRIQ3A6PVS8 624 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 C2CD4DB7Z1M9 353 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 M0QZ92 97 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 EPHB6O15197 1021 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 B4GALT5O43286 388 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 KIF5CO60282 957 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 FAM189A1O60320 539 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 N4BP1O75113 896 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CSDE1O75534 798 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GRAP2O75791 330 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 NOL4O94818 638 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ERLIN2O94905 339 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 MT-ATP6P00846 226 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TSHBP01222 138 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CHRNA1P02708 482 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GYPCP04921 128 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ATP1A1P05023 1023 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CHRNGP07510 517 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TPM1P09493 284 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 FRMD6-AS1P0C7T7 363 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 IGHV4-38-2P0DP08 117 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GHRP10912 638 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms