RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATP6AP1LQ52LC2 224 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 SLC25A25Q6KCM7 469 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 ANKRD26P1Q6NSI1 321 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 RPUSD3Q6P087 351 aaKnown RBP13.67□□□□□ -0.22
USP4-212ENST00000486549 IKBIPQ70UQ0 350 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 GALNTL5Q7Z4T8 443 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 ZNF227Q86WZ6 799 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 TMEM178AQ8NBL3 297 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 OR9A2Q8NGT5 310 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 NUBPLQ8TB37 319 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.67□□□□□ -0.22
USP4-212ENST00000486549 TUBGCP3Q96CW5 907 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 SCMH1Q96GD3 660 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 FCRL1Q96LA6 429 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 TAAR6Q96RI8 345 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 CCT7Q99832 543 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 WWTR1Q9GZV5 400 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 OR10A5Q9H207 317 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 HPF1Q9NWY4 346 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 EHD3Q9NZN3 535 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 BCAP29Q9UHQ4 241 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 BAIAP2L1Q9UHR4 511 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 TMED5Q9Y3A6 229 aa13.67□□□□□ -0.22
USP4-212ENST00000486549 SETXQ7Z333 2677 aaKnown RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 C2orf92A0A1B0GVN3 265 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 CLEC18AA5D8T8 446 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 OR6C76A6NM76 312 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 TCP11X1B4DZS4 312 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 ZNF354AO60765 605 aaPredicted RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 PCSK2P16519 638 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 GNLYP22749 145 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 MAPK1P28482 360 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 UQCRFS1P47985 274 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 MGAT2Q10469 447 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 INAQ16352 499 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 TRMT12Q53H54 448 aaKnown RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 HLA-DQA1Q5Y7H0 255 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 CLEC18BQ6UXF7 455 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 SAMD14Q8IZD0 417 aaPredicted RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 FAM9CQ8IZT9 166 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 BCORP1Q8N888 145 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 FNDC5Q8NAU1 212 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 CLEC18CQ8NCF0 446 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 SIMC1Q8NDZ2 872 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 OR7G1Q8NGA0 311 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 SLC22A8Q8TCC7 542 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 KAT2AQ92830 837 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 TRIM45Q9H8W5 580 aaPredicted RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 VIPAS39Q9H9C1 493 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 OLAHQ9NV23 265 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 PNPOQ9NVS9 261 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 EXO1Q9UQ84 846 aaKnown RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 WBP11Q9Y2W2 641 aaKnown RBP13.66□□□□□ -0.22
USP4-212ENST00000486549 SVILO95425 2214 aa13.66□□□□□ -0.22
USP4-212ENST00000486549 CDK2AP1O14519 115 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 NME2P1O60361 137 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 SNUPNO95149 360 aaKnown RBP13.65□□□□□ -0.22
USP4-212ENST00000486549 BCKDHAP12694 445 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 S1PR1P21453 382 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 NME2P22392 152 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 NTSP30990 170 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 NR0B1P51843 470 aaKnown RBP13.65□□□□□ -0.22
USP4-212ENST00000486549 NCBP2P52298 156 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP4-212ENST00000486549 MAP4K2Q12851 820 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 DUSP8Q13202 625 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 MPEG1Q2M385 716 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 ZNF628Q5EBL2 1059 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 PIGGQ5H8A4 983 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 C6orf136Q5SQH8 315 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 ATG16L1Q676U5 607 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 OPN5Q6U736 354 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 MDGA2Q7Z553 956 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.65□□□□□ -0.22
USP4-212ENST00000486549 TRIM42Q8IWZ5 723 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 GPALPP1Q8IXQ4 340 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 LIX1Q8N485 282 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 ZNF615Q8N8J6 731 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 FAM98AQ8NCA5 519 aaKnown RBP13.65□□□□□ -0.22
USP4-212ENST00000486549 OR52R1Q8NGF1 315 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 C16orf52Q8NHV5 167 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 FAR1Q8WVX9 515 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 SH3GL2Q99962 352 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 MANSC1Q9H8J5 431 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 ANKRA2Q9H9E1 313 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 TIMMDC1Q9NPL8 285 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 MARCOQ9UEW3 520 aaPredicted RBP13.65□□□□□ -0.22
USP4-212ENST00000486549 DTX4Q9Y2E6 619 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 PCDHGB6Q9Y5F9 930 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 EML6Q6ZMW3 1958 aa13.65□□□□□ -0.22
USP4-212ENST00000486549 MYO1GB0I1T2 1018 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 PDPK1O15530 556 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 SASH3O75995 380 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 AGFG2O95081 481 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 NADKO95544 446 aaPredicted RBP13.64□□□□□ -0.23
USP4-212ENST00000486549 CBX7O95931 251 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 KITP10721 976 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 GPX3P22352 226 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 MPIP34949 423 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 SOX18P35713 384 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms