RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SHC1P29353 583 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 PDHA2P29803 388 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 RANBP1P43487 201 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 MAGOHP61326 146 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 C2orf54Q08AI8 447 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 RAPSNQ13702 412 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 KBTBD12Q3ZCT8 623 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 LBHQ53QV2 105 aaPredicted RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 SPOUT1Q5T280 376 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 KCTD16Q68DU8 428 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 ZNF343Q6P1L6 599 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 APTXQ7Z2E3 356 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 ZNF589Q86UQ0 364 aaPredicted RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 ZFAND4Q86XD8 727 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 TIGD4Q8IY51 512 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 APCDD1Q8J025 514 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 LYG1Q8N1E2 194 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 PRSS35Q8N3Z0 413 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 UBL4BQ8N7F7 174 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 TCEANCQ8N8B7 351 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 ATP8B4Q8TF62 1192 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 LRRC15Q8TF66 581 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 GRK7Q8WTQ7 553 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 DDI1Q8WTU0 396 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 MAGOHBQ96A72 148 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 TLCD1Q96CP7 247 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 HAUS1Q96CS2 278 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 CNRIP1Q96F85 164 aaPredicted RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 TCEANC2Q96MN5 208 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 ZMAT2Q96NC0 199 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 ECT2Q9H8V3 914 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 CYP39A1Q9NYL5 469 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 MUTYHQ9UIF7 546 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 ASB3Q9Y575 518 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 NOTCH3Q9UM47 2321 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 NWD2Q9ULI1 1742 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 COL14A1Q05707 1796 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 DISP2A7MBM2 1401 aa4.9□□□□□ -1.62
USP40-213ENST00000483216 ZNF609O15014 1411 aa4.9□□□□□ -1.62
USP40-213ENST00000483216 PLCH1Q4KWH8 1693 aa4.9□□□□□ -1.62
USP40-213ENST00000483216 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.9□□□□□ -1.62
USP40-213ENST00000483216 TMEM150CB9EJG8 249 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 K7EQD1 137 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 RASGRF2O14827 1237 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 SAP30O75446 220 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 CSDE1O75534 798 aaKnown RBP4.9□□□□□ -1.63
USP40-213ENST00000483216 CIB2O75838 187 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 GBAP04062 536 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 GATA1P15976 413 aaPredicted RBP4.9□□□□□ -1.63
USP40-213ENST00000483216 CHRNA3P32297 505 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 IL10RBQ08334 325 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 TFCP2Q12800 502 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 ENPP2Q13822 863 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 DUSP5Q16690 384 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 NDUFA5Q16718 116 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 FAM91A1Q658Y4 838 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 PPP1R2P3Q6NXS1 205 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 LCLAT1Q6UWP7 414 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 GPR141Q7Z602 305 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 PRUNE1Q86TP1 453 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 NELFCDQ8IXH7 590 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 CATSPER1Q8NEC5 780 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 CCDC110Q8TBZ0 833 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 AGAP11Q8TF27 550 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 SCFD1Q8WVM8 642 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 ESR2Q92731 530 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 MCUR1Q96AQ8 359 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 MAGEB18Q96M61 343 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 ZNF317Q96PQ6 595 aaPredicted RBP4.9□□□□□ -1.63
USP40-213ENST00000483216 FERMT1Q9BQL6 677 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 LZTS2Q9BRK4 669 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 CCSER1Q9C0I3 900 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 CARD9Q9H257 536 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 FAM96AQ9H5X1 160 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 MRGBPQ9NV56 204 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 UTP6Q9NYH9 597 aaKnown RBP4.9□□□□□ -1.63
USP40-213ENST00000483216 TMOD3Q9NYL9 352 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 FBXL5Q9UKA1 691 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 TMED5Q9Y3A6 229 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 MROH7-TTC4A0A0A0MT08 1334 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 PFASO15067 1338 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 ITGB4P16144 1822 aa4.9□□□□□ -1.63
USP40-213ENST00000483216 TDRD15B5MCY1 1934 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 WNK3Q9BYP7 1800 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 LSM1O15116 133 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 CYTH3O43739 400 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 ECE2O60344 883 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 CDH16O75309 829 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 FKBP6O75344 327 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 PGLSO95336 258 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 C9P02748 559 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 EDNRAP25101 427 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 HMGB2P26583 209 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 CRKLP46109 303 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 HSPA13P48723 471 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 CAPZA1P52907 286 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 CLDN17P56750 224 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 FKBP3Q00688 224 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 DHODHQ02127 395 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SLC34A1Q06495 639 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms