RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	MANEAL	Q5VSG8	457 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	FAM160B1	Q5W0V3	765 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TXNRD3NB	Q6F5E7	133 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	NAPEPLD	Q6IQ20	393 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ESRP1	Q6NXG1	681 aa	Known RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	BHLHB9	Q6PI77	547 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	RNF165	Q6ZSG1	346 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	AHSA2	Q719I0	299 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ZNF627	Q7L945	461 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CMC1	Q7Z7K0	106 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CENPL	Q8N0S6	344 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MS4A15	Q8N5U1	240 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	WDSUB1	Q8N9V3	476 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	COLGALT1	Q8NBJ5	622 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	C7orf57	Q8NEG2	295 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MCPH1	Q8NEM0	835 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TRPV1	Q8NER1	839 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	OR2T12	Q8NG77	320 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	OR52K2	Q8NGK3	314 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	IL31RA	Q8NI17	732 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CNIH3	Q8TBE1	160 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CREB3L4	Q8TEY5	395 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	RIT1	Q92963	219 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	SLC25A46	Q96AG3	418 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ZNF669	Q96BR6	464 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	RHBDF1	Q96CC6	855 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ORAI1	Q96D31	301 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	COQ8B	Q96D53	544 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TCEAL4	Q96EI5	215 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	SCRN2	Q96FV2	425 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	WBP1	Q96G27	269 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	DIRAS2	Q96HU8	199 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	PYURF	Q96I23	114 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	GPR78	Q96P69	363 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ZBTB18	Q99592	522 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	EPYC	Q99645	322 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MGLL	Q99685	303 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	PIP5K1A	Q99755	562 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TREX2	Q9BQ50	279 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CHCHD6	Q9BRQ6	235 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ADPGK	Q9BRR6	497 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TMEM43	Q9BTV4	400 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	DPCD	Q9BVM2	203 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	SPATA5L1	Q9BVQ7	753 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TAPBPL	Q9BX59	468 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ERVK-6	Q9BXR3	956 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	B3GNT5	Q9BYG0	378 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	NKX6-2	Q9C056	277 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MMP28	Q9H239	520 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TTYH1	Q9H313	450 aa	Predicted RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	DPAGT1	Q9H3H5	408 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	KLHL31	Q9H511	634 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ANKRD19P	Q9H560	264 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	SMURF2	Q9HAU4	748 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	POPDC3	Q9HBV1	291 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MRPS30	Q9NP92	439 aa	Known RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	KMT5A	Q9NQR1	393 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	ITM2C	Q9NQX7	267 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	TREM2	Q9NZC2	230 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	HCN3	Q9P1Z3	774 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	MYEF2	Q9P2K5	600 aa	Known RBP	4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	XPR1	Q9UBH6	696 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	BTNL2	Q9UIR0	455 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	POMT2	Q9UKY4	750 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	CLEC4A	Q9UMR7	237 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	PLEKHA6	Q9Y2H5	1048 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520		Q9Y3F1	56 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	PKP3	Q9Y446	797 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	PSAT1	Q9Y617	370 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	COL1A2	P08123	1366 aa		4.47	□□□□□ -1.69
PTCD3-212	ENST00000477520	LCT	P09848	1927 aa		4.46	□□□□□ -1.69
PTCD3-212	ENST00000477520		A0A0B4J293	547 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	HYKK	A2RU49	373 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	RAB19	A4D1S5	217 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	C2CD4B	A6NLJ0	364 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520		A8MT66	165 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520		A8MUA0	341 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	FAM86B1	E9PN63	330 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	CBX4	O00257	560 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	PCDH17	O14917	1159 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	AZIN1	O14977	448 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	ADAMDEC1	O15204	470 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	SEPT4	O43236	478 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	SSX4	O60224	188 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	LCMT2	O60294	686 aa	Known RBP	4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	SDC3	O75056	442 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	TMEM127	O75204	238 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	DUSP11	O75319	330 aa	Known RBP	4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR4F21	O95013	312 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	PTBP3	O95758	552 aa	Known RBP	4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	RECK	O95980	971 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	PAK4	O96013	591 aa	Predicted RBP	4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	EGF	P01133	1207 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	IGHV2-70	P01814	119 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	CNP	P09543	421 aa	Known RBP	4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	SBK2	P0C263	348 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	FAM86B2	P0C5J1	330 aa		4.46	□□□□□ -1.7
PTCD3-212	ENST00000477520	SULT1A3	P0DMM9	295 aa		4.46	□□□□□ -1.7

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