RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	UBFD1	O14562	309 aa	Known RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	BIRC5	O15392	142 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	CHEK2	O96017	543 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	UROS	P10746	265 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	SERPINB3	P29508	390 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	ETV4	P43268	484 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	STT3A	P46977	705 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	FOXA1	P55317	472 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	HMGCS1	Q01581	520 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	ACSM2A	Q08AH3	577 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	TTMP	Q5BVD1	217 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	CMPK2	Q5EBM0	449 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	NDUFAF5	Q5TEU4	345 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	ACSM2B	Q68CK6	577 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	ZCCHC23	Q6ZST2	131 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	NUDCD3	Q8IVD9	361 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	C1orf52	Q8N6N3	182 aa	Known RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	ZFP62	Q8NB50	900 aa	Predicted RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	OR5M3	Q8NGP4	307 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	OR8K3	Q8NH51	312 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	C16orf52	Q8NHV5	167 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	TANK	Q92844	425 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	SGCZ	Q96LD1	299 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	PAIP2	Q9BPZ3	127 aa	Known RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	FAM173A	Q9BQD7	235 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	PELO	Q9BRX2	385 aa	Known RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	ZNF717	Q9BY31	904 aa	Predicted RBP	14	□□□□□ -0.17
VARS-223	ENST00000474643	LDAH	Q9H6V9	325 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	ADAM29	Q9UKF5	820 aa		14	□□□□□ -0.17
VARS-223	ENST00000474643	CSMD1	Q96PZ7	3565 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	GNG14	A0A1W2PPG7	69 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	GLOD5	A6NK44	160 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	NPIPA2	E9PIF3	369 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	NPIPA3	F8WFD2	350 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	AZIN1	O14977	448 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	PROM1	O43490	865 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	FGF17	O60258	216 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	NPHS1	O60500	1241 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	PRKRA	O75569	313 aa	Known RBP	13.99	□□□□□ -0.17
VARS-223	ENST00000474643	BPGM	P07738	259 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	DHRS4L1	P0CG22	281 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	CHN1	P15882	459 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ALOX15	P16050	662 aa	Predicted RBP	13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ELAVL4	P26378	380 aa	Known RBP	13.99	□□□□□ -0.17
VARS-223	ENST00000474643	SSTR2	P30874	369 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	KCNJ2	P63252	427 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	FOLH1	Q04609	750 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ZNF750	Q32MQ0	723 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	SPIN4	Q56A73	249 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ZNF321P	Q8N8H1	164 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ANKRD42	Q8N9B4	389 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	GOLM1	Q8NBJ4	401 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	FAM13C	Q8NE31	585 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	OR52N2	Q8NGI0	321 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ASB5	Q8WWX0	329 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	RND1	Q92730	232 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	TTTY12	Q9BZ98	90 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ACPT	Q9BZG2	426 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643	ASB4	Q9Y574	426 aa		13.99	□□□□□ -0.17
VARS-223	ENST00000474643		A0A1W2PR48	441 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	TMEM120B	A0PK00	339 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	FIGNL2	A6NMB9	653 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	FAM90A27P	A6NNH2	459 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	PCDH7	O60245	1069 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	SNUPN	O95149	360 aa	Known RBP	13.98	□□□□□ -0.17
VARS-223	ENST00000474643	AIFM1	O95831	613 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	CNR1	P21554	472 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	PIK3R1	P27986	724 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	ALDH9A1	P49189	494 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	HHAT	Q5VTY9	493 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	HLA-DQA1	Q5Y7H0	255 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	CLEC6A	Q6EIG7	209 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	OR52E8	Q6IFG1	317 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	MRM1	Q6IN84	353 aa	Known RBP	13.98	□□□□□ -0.17
VARS-223	ENST00000474643	MEX3B	Q6ZN04	569 aa	Known RBP	13.98	□□□□□ -0.17
VARS-223	ENST00000474643	RNF111	Q6ZNA4	994 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	ACAD11	Q709F0	780 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	FAM109A	Q8N4B1	249 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	ARFGAP2	Q8N6H7	521 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	OR10Q1	Q8NGQ4	319 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	AGR3	Q8TD06	166 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	RIT1	Q92963	219 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	PPWD1	Q96BP3	646 aa	Known RBP	13.98	□□□□□ -0.17
VARS-223	ENST00000474643	SENP5	Q96HI0	755 aa	Predicted RBP	13.98	□□□□□ -0.17
VARS-223	ENST00000474643	FBXL20	Q96IG2	436 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	FAIM2	Q9BWQ8	316 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	NKIRAS1	Q9NYS0	192 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	CLDN16	Q9Y5I7	305 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	ABCA12	Q86UK0	2595 aa		13.98	□□□□□ -0.17
VARS-223	ENST00000474643	SLC28A1	O00337	649 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	BCKDK	O14874	412 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	RGS14	O43566	566 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	CHRNB4	P30926	498 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	SERPINB5	P36952	375 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	SERPINB4	P48594	390 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	DNASE1L1	P49184	302 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	ERVK-8	P63133	956 aa		13.97	□□□□□ -0.17
VARS-223	ENST00000474643	GALNT1	Q10472	559 aa	Predicted RBP	13.97	□□□□□ -0.17
VARS-223	ENST00000474643	TBL3	Q12788	808 aa	Known RBP	13.97	□□□□□ -0.17

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