RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ELMOD3Q96FG2 381 aa12.75□□□□□ -0.37
COL6A3-209ENST00000472056 CDC7O00311 574 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 KCNJ13O60928 360 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SLC22A5O76082 557 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 RPP14O95059 124 aaKnown RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 MAL2Q969L2 176 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF736B4DX44 427 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 NDUFV1P49821 464 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 DGKQP52824 942 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PSPHP78330 225 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ECM1Q16610 540 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PLAG1Q6DJT9 500 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CASTOR1Q8WTX7 329 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SLCO5A1Q9H2Y9 848 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SUV39H2Q9H5I1 410 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 NLE1Q9NVX2 485 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ZFP37Q9Y6Q3 630 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 OR51F1A6NGY5 319 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GJB1P08034 283 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GNRHRP30968 328 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 KLF1Q13351 362 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GBX1Q14549 363 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GFOD2Q3B7J2 385 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 UAP1L1Q3KQV9 507 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SERPINA11Q86U17 422 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SLC9B2Q86UD5 537 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CMIPQ8IY22 773 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 OR4K14Q8NGD5 310 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 KIAA1143Q96AT1 154 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 SLC6A5Q9Y345 797 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PLEKHM1Q9Y4G2 1056 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 APC2O95996 2303 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 TLL1O43897 1013 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 VEGFDO43915 354 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PCCBP05166 539 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ADCYAP1R1P41586 468 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 KDELC1Q6UW63 502 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 TXNDC5Q8NBS9 432 aaKnown RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 WDR26Q9H7D7 661 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CENPMQ9NSP4 180 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PPP4R1LQ9P1A2 415 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 EDDM13A0A1B0GTR0 161 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CASC3O15234 703 aaKnown RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 AGXTP21549 392 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 MALLQ13021 153 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GDPD4Q6W3E5 623 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 RDH10Q8IZV5 341 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 OR6T1Q8NGN1 323 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 GRHL3Q8TE85 626 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 NT5C3BQ969T7 300 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 DNTTIP1Q9H147 329 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 RPS10P5Q9NQ39 176 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 C4AP0C0L4 1744 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 C4BP0C0L5 1744 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 BTBD17A6NE02 478 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 PTERQ96BW5 349 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF597Q96LX8 424 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 HSD3B7Q9H2F3 369 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ADAP2Q9NPF8 381 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 IL36AQ9UHA7 158 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 LCMT2O60294 686 aaKnown RBP12.74□□□□□ -0.37
COL6A3-209ENST00000472056 HTR3BO95264 441 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CREB1P16220 341 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 MAP2K4P45985 399 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 TAS2R46P59540 309 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 VEZF1Q14119 521 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 ERVK13-1Q9NX77 482 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 CD300AQ9UGN4 299 aa12.74□□□□□ -0.37
COL6A3-209ENST00000472056 TUBGCP6Q96RT7 1819 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 KCNQ2O43526 872 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 UBL4AP11441 157 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PPP3CBP16298 524 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 INCA1Q0VD86 236 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SPANXN4Q5MJ08 99 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CCNJQ5T5M9 372 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CDCA2Q69YH5 1023 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SHFQ7M4L6 423 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SLC15A4Q8N697 577 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 OR8S1Q8NH09 359 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 L3HYPDHQ96EM0 354 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 P2RX7Q99572 595 aaKnown RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PCTPQ9UKL6 214 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TDRD6O60522 2096 aaKnown RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SBK2P0C263 348 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 FGF3P11487 239 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CLDN8P56748 225 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ARHGAP1Q07960 439 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PCK2Q16822 640 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 FLYWCH1Q4VC44 716 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CARD16Q5EG05 197 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ENPP7Q6UWV6 458 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ADAM7Q9H2U9 754 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 UFSP2Q9NUQ7 469 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SLC22A14Q9Y267 594 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 A3GALT2U3KPV4 340 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CLDN24A6NM45 220 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ERI3O43414 337 aaKnown RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CD48P09326 243 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 CTHP32929 405 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 RAB4BP61018 213 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms