RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 HTR3CQ8WXA8 447 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 NPIPB3Q92617 1050 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ESR2Q92731 530 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 CCDC127Q96BQ5 260 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 COQ2Q96H96 371 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 EGLN2Q96KS0 407 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF559Q9BR84 538 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ABHD14AQ9BUJ0 271 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FNDC11Q9BVV2 318 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 HINT2Q9BX68 163 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FTHL17Q9BXU8 183 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 NUF2Q9BZD4 464 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ROGDIQ9GZN7 287 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 C6orf62Q9GZU0 229 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 UPF3AQ9H1J1 476 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KCNK15Q9H427 330 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 TRIM45Q9H8W5 580 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FOLH1BQ9HBA9 442 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KLQ9UEF7 1012 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 MYO6Q9UM54 1294 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FAF1Q9UNN5 650 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 RASD1Q9Y272 281 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 AAR2Q9Y312 384 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 UBE2J1Q9Y385 318 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KLF2Q9Y5W3 355 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 MN1Q10571 1320 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 EVPLQ92817 2033 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A0A6YYH2 397 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A0G2JLW4 131 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FAM237AA0A1B0GTK4 181 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TYW5A2RUC4 315 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FUOMA2VDF0 154 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 MGAT4DA6NG13 374 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 A6NJ64 397 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 C17orf100A8MU93 164 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 NPIPA2E9PIF3 369 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TOR1AO14656 332 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ARPC3O15145 178 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 KMOO15229 486 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ASS1P00966 412 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 WNT1P04628 370 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 HOXB5P09067 269 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 OR4E1P0C645 316 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 RRASP10301 218 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FGF5P12034 268 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ANXA7P20073 488 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 PCMT1P22061 227 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 P2RY2P41231 377 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 IER3P46695 156 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 RGS7P49802 495 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CDH4P55283 916 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 LTBQ06643 244 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FOXM1Q08050 763 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CDH17Q12864 832 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ILKQ13418 452 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ELAVL3Q14576 367 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 PSG3Q16557 428 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 NDUFA5Q16718 116 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CA9Q16790 459 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 COL28A1Q2UY09 1125 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 C18orf21Q32NC0 220 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CEP85LQ5SZL2 805 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 DCAF12L2Q5VW00 463 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ASPHD2Q6ICH7 369 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 DUS1LQ6P1R4 473 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 LRRC8BQ6P9F7 803 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF474Q6S9Z5 364 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CBLN3Q6UW01 205 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FAM198BQ6UWH4 519 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC39A5Q6ZMH5 540 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 Q6ZPB1 254 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ABHD12BQ7Z5M8 362 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SNX20Q7Z614 316 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TAC4Q86UU9 113 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ZFAND4Q86XD8 727 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM126BQ8IUX1 230 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 VSTM4Q8IW00 320 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 LAS2Q8IYD9 372 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 C19orf18Q8NEA5 215 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 OR2L3Q8NG85 312 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 OR10Z1Q8NGY1 313 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 RHEBL1Q8TAI7 183 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 DYDC1Q8WWB3 177 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ELMO1Q92556 727 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CD101Q93033 1021 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CERS2Q96G23 380 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 FAM84BQ96KN1 310 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SPATA33Q96N06 139 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 OPALINQ96PE5 141 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 BBS4Q96RK4 519 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TGS1Q96RS0 853 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CCT8L2Q96SF2 557 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 CYP2S1Q96SQ9 504 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 MTERF1Q99551 399 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SEPT5Q99719 369 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 TM6SF2Q9BZW4 377 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 WWP1Q9H0M0 922 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 OR2AG1Q9H205 316 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 LHX5Q9H2C1 402 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms