RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 HLA-DPB1P04440 258 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 BCHEP06276 602 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 RB1P06400 928 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 IFI30P13284 250 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 NAT1P18440 290 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 TNNI3P19429 210 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 GSTM3P21266 225 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 GIPRP48546 466 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SLC11A1P49279 550 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 AGFG1P52594 562 aaKnown RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 TAS2R50P59544 299 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 DCDC1P59894 354 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SNRPD1P62314 119 aaKnown RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 SMAD3P84022 425 aaKnown RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 UBE3AQ05086 875 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 RGS1Q08116 209 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 PRSS53Q2L4Q9 553 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 COL28A1Q2UY09 1125 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SYTL3Q4VX76 610 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 PLA1AQ53H76 456 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 RPS26P11Q5JNZ5 115 aaPredicted RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 ENTPD8Q5MY95 495 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 OR2G6Q5TZ20 316 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 HACD4Q5VWC8 232 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 MFSD14CQ5VZR4 134 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SLC8B1Q6J4K2 584 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 TEX261Q6UWH6 196 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 DEF8Q6ZN54 512 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 TMPRSS11BQ86T26 416 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 FBXL6Q8N531 539 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 HORMAD2Q8N7B1 307 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 FBXO15Q8NCQ5 510 aaPredicted RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 OR8H1Q8NGG4 311 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 WDR48Q8TAF3 677 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SLC7A13Q8TCU3 470 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SLC38A5Q8WUX1 472 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 NEIL2Q969S2 332 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 TIFAQ96CG3 184 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 TRMT2BQ96GJ1 504 aaKnown RBP6.91□□□□□ -1.3
USP48-206ENST00000464577 TM9SF2Q99805 663 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 PRR14Q9BWN1 585 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SPNS1Q9H2V7 528 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 SUV39H2Q9H5I1 410 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 CXorf36Q9H7Y0 433 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 ASB6Q9NWX5 421 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 MALT1Q9UDY8 824 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 FBXW2Q9UKT8 454 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 CBLCQ9ULV8 474 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 STON1Q9Y6Q2 735 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 U3KQ87 197 aa6.91□□□□□ -1.3
USP48-206ENST00000464577 DOCK3Q8IZD9 2030 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 SMIM30A4D0T7 59 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 KDM4EB2RXH2 506 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 MEN1O00255 615 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 CDK2AP1O14519 115 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 NPC1O15118 1278 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 TEX28O15482 410 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 FABP7O15540 132 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 CHST10O43529 356 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 SLC16A8O95907 504 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 RAF1P04049 648 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 LIMS3P0CW19 117 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 LIMS4P0CW20 117 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 POU3F3P20264 500 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 MMP11P24347 488 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 AVPR1BP47901 424 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 CAV3P56539 151 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 FKBP1BP68106 108 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 GPR176Q14439 515 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 SLBPQ14493 270 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP48-206ENST00000464577 NFE2L1Q14494 772 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 FCN2Q15485 313 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 TMEM44Q2T9K0 475 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 HSD17B12Q53GQ0 312 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 FAM205BPQ63HN1 556 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 ZNF57Q68EA5 555 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 ACSM5Q6NUN0 579 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 C1orf94Q6P1W5 598 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 PODNL1Q6PEZ8 512 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 PRSS55Q6UWB4 352 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 ABI3BPQ7Z7G0 1075 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 MARCH9Q86YJ5 346 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 GPALPP1Q8IXQ4 340 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 CELF5Q8N6W0 485 aaKnown RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 LRRC17Q8N6Y2 441 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 ZNF680Q8NEM1 530 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 ZNF431Q8TF32 576 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 GATAD2BQ8WXI9 593 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 OR5P2Q8WZ92 322 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 UPF1Q92900 1129 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP48-206ENST00000464577 OTULINQ96BN8 352 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 OMA1Q96E52 524 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 SCMH1Q96GD3 660 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 TMEM169Q96HH4 297 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 SENP5Q96HI0 755 aaPredicted RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 GFM1Q96RP9 751 aaKnown RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 ZNF607Q96SK3 696 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 CPEB1Q9BZB8 566 aaKnown RBP6.9□□□□□ -1.3
USP48-206ENST00000464577 RNF32Q9H0A6 362 aa6.9□□□□□ -1.3
USP48-206ENST00000464577 MED28Q9H204 178 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms