RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CAMKMTQ7Z624 323 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 PACS2Q86VP3 889 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 ZNF615Q8N8J6 731 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 RHEBL1Q8TAI7 183 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 KCTD4Q8WVF5 259 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 ADIPOR1Q96A54 375 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 NTNG2Q96CW9 530 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 REPS1Q96D71 796 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 SECISBP2Q96T21 854 aaKnown RBP20.69■□□□□ 0.9
USP4-208ENST00000464168 WDR41Q9HAD4 459 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 TEX10Q9NXF1 929 aaPredicted RBP20.69■□□□□ 0.9
USP4-208ENST00000464168 PSD3Q9NYI0 1048 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 RPH3AQ9Y2J0 694 aaPredicted RBP20.69■□□□□ 0.9
USP4-208ENST00000464168 C15orf41Q9Y2V0 281 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 ACOT9Q9Y305 439 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 TUBAL3A6NHL2 446 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 UGDHO60701 494 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 GBAP04062 536 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 CT62P0C5K7 136 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 EPXP11678 715 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 BMP7P18075 431 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 CASP3P42574 277 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 NEK2P51955 445 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 PHEXP78562 749 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 SF3B4Q15427 424 aaKnown RBP eCLIP20.68■□□□□ 0.9
USP4-208ENST00000464168 NHSL2Q5HYW2 709 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 HLA-DQA1Q5Y7H0 255 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 PAMR1Q6UXH9 720 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 WDR20Q8TBZ3 569 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 HSPBAP1Q96EW2 488 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 WDYHV1Q96HA8 205 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 UGT2B28Q9BY64 529 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 CAMK2AQ9UQM7 478 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 RNF11Q9Y3C5 154 aa20.68■□□□□ 0.9
USP4-208ENST00000464168 CD8B2A6NJW9 211 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 FOXE1O00358 373 aaPredicted RBP20.67■□□□□ 0.9
USP4-208ENST00000464168 FOSL1P15407 271 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 MASP1P48740 699 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 AGFG1P52594 562 aaKnown RBP20.67■□□□□ 0.9
USP4-208ENST00000464168 ALDH18A1P54886 795 aaKnown RBP20.67■□□□□ 0.9
USP4-208ENST00000464168 IRF9Q00978 393 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 EIPR1Q53HC9 387 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 DCST1Q5T197 706 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 OR52E8Q6IFG1 317 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 KIF18BQ86Y91 864 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 GALNT12Q8IXK2 581 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 L3MBTL4Q8NA19 623 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 FBF1Q8TES7 1133 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 OR10A5Q9H207 317 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 IPPKQ9H8X2 491 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 MED12Q93074 2177 aa20.67■□□□□ 0.9
USP4-208ENST00000464168 NSD1Q96L73 2696 aaPredicted RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 MBD3L4A6NDZ8 208 aaPredicted RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 MBD3L3A6NE82 208 aaPredicted RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 MBD3L5A6NJ08 208 aaPredicted RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 RAD51CO43502 376 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 GFAPP14136 432 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 CTSSP25774 331 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 PIK3R1P27986 724 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 TMED10P49755 219 aaKnown RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 GTF2H2Q13888 395 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 PCBP2Q15366 365 aaKnown RBP eCLIP20.66■□□□□ 0.9
USP4-208ENST00000464168 GTF2H2CQ6P1K8 395 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 GOLGA7Q7Z5G4 137 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 NUDT13Q86X67 352 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 PRR22Q8IZ63 422 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 MMP21Q8N119 569 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 MBD3L2Q8NHZ7 208 aaPredicted RBP20.66■□□□□ 0.9
USP4-208ENST00000464168 LINC01560Q8TB33 94 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 TMEM41AQ96HV5 264 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 TRIB1Q96RU8 372 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 CALHM2Q9HA72 323 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 JKAMPQ9P055 326 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 KIAA1549Q9HCM3 1950 aa20.66■□□□□ 0.9
USP4-208ENST00000464168 A0A087X1B8 175 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 CCDC189A1A4V9 331 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 ATE1O95260 518 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 RAF1P04049 648 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 C2P06681 752 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 S1PR1P21453 382 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 MAGEA4P43358 317 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 PIK3CGP48736 1102 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 NAGLUP54802 743 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 PLTPP55058 493 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 NRG3P56975 720 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 TOMM20Q15388 145 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 FAM83EQ2M2I3 478 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 WIPI1Q5MNZ9 446 aaPredicted RBP20.65■□□□□ 0.9
USP4-208ENST00000464168 TIGD3Q6B0B8 471 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 C17orf47Q8NEP4 570 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 OR4K14Q8NGD5 310 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 ABTB1Q969K4 478 aaPredicted RBP20.65■□□□□ 0.9
USP4-208ENST00000464168 PLEKHF2Q9H8W4 249 aa20.65■□□□□ 0.9
USP4-208ENST00000464168 HMX2A2RU54 273 aa20.64■□□□□ 0.89
USP4-208ENST00000464168 SEMA3DO95025 777 aa20.64■□□□□ 0.89
USP4-208ENST00000464168 SIX3O95343 332 aaPredicted RBP20.64■□□□□ 0.89
USP4-208ENST00000464168 ABCB1P08183 1280 aaPredicted RBP20.64■□□□□ 0.89
USP4-208ENST00000464168 ABCD3P28288 659 aa20.64■□□□□ 0.89
USP4-208ENST00000464168 PTPN6P29350 595 aa20.64■□□□□ 0.89
USP4-208ENST00000464168 STX2P32856 288 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms