RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ANKRD7Q92527 254 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PYCR2Q96C36 320 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 FBXL8Q96CD0 374 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 LRRC39Q96DD0 335 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 Q96MF0 132 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 RUNDC3BQ96NL0 473 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 OR4K3Q96R72 315 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 CLK4Q9HAZ1 481 aaKnown RBP6.79□□□□□ -1.32
USP54-208ENST00000461520 KCNK13Q9HB14 408 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 MMP25Q9NPA2 562 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 PPANQ9NQ55 473 aaKnown RBP6.79□□□□□ -1.32
USP54-208ENST00000461520 SEC14L3Q9UDX4 400 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 ENTPD4Q9Y227 616 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 GPR45Q9Y5Y3 372 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 DOCK10Q96BY6 2186 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 APCP25054 2843 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 OTOGQ6ZRI0 2925 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 F8P00451 2351 aa6.79□□□□□ -1.32
USP54-208ENST00000461520 SVILO95425 2214 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 OR2W5A6NFC9 320 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 TTI1O43156 1089 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 HNRNPRO43390 633 aaKnown RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 OR1F1O43749 312 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 GALR3O60755 368 aaPredicted RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 BANF1O75531 89 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 CDC123O75794 336 aaPredicted RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 UNC5CO95185 931 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ESRRBO95718 433 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 MLYCDO95822 493 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 GUCA1CO95843 209 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 FHP07954 510 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 PRF1P14222 555 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ALOX12P18054 663 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 MST1P26927 711 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 AHRP35869 848 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ELK3P41970 407 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 SLC26A5P58743 744 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 TAS2R50P59544 299 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ACTN3Q08043 901 aaPredicted RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 RGS1Q08116 209 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ART3Q13508 389 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 FRG1Q14331 258 aaKnown RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 ABRAXAS2Q15018 415 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 DEFB134Q4QY38 66 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 SFT2D3Q587I9 215 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ZNF766Q5HY98 468 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 STEAP4Q687X5 459 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 MTFR2Q6P444 385 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 PAPD4Q6PIY7 484 aaKnown RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 SBSNQ6UWP8 590 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 SEM1Q6ZVN7 128 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ABHD13Q7L211 337 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ZGRF1Q86YA3 2104 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 CRLF3Q8IUI8 442 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 BEST3Q8N1M1 668 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 NKAPQ8N5F7 415 aaKnown RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 SLC5A8Q8N695 610 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 HORMAD2Q8N7B1 307 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 ZNF740Q8NDX6 193 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 TRPV3Q8NET8 790 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 OR5T3Q8NGG3 340 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 NT5CQ8TCD5 201 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 SLC5A11Q8WWX8 675 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 NEIL2Q969S2 332 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 TBC1D20Q96BZ9 403 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 MOCOSQ96EN8 888 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 OLFM1Q99784 485 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 UTP23Q9BRU9 249 aaKnown RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 PLAC1Q9HBJ0 212 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 FAM30AQ9NZY2 134 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 COPG2Q9UBF2 871 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 KLF2Q9Y5W3 355 aaPredicted RBP6.78□□□□□ -1.32
USP54-208ENST00000461520 TEX264Q9Y6I9 313 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 HEATR5BQ9P2D3 2071 aa6.78□□□□□ -1.32
USP54-208ENST00000461520 TRGV8A0A0C4DH27 118 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ASPDHA6ND91 283 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ZNF860A6NHJ4 632 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 PRSS44E7EML9 344 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CCDC188H7C350 402 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CHST10O43529 356 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 GPANK1O95872 356 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SERPIND1P05546 499 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SMIM10L1P0DMW3 83 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ZNF37AP17032 561 aaPredicted RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 EEF1DP29692 281 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 CA7P43166 264 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 HNMTP50135 292 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CASP6P55212 293 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ARL4CP56559 192 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 RIPPLY3P57055 190 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 OR4D2P58180 307 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 BLOC1S1P78537 153 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CDKL1Q00532 357 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 REEP5Q00765 189 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 DR1Q01658 176 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ILF2Q12905 390 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 OR1C1Q15619 314 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 PPP1R3AQ16821 1122 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 KRTCAP3Q53RY4 240 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 FCRLBQ6BAA4 426 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms