RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DRD5P21918 477 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 STOMP27105 288 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 BTCP35070 178 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 IRS1P35568 1242 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 WDR5P61964 334 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 ILKQ13418 452 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 GARNL3Q5VVW2 1013 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF782Q6ZMW2 699 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 GPR135Q8IZ08 494 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 PIAS4Q8N2W9 510 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 LHFPL5Q8TAF8 219 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 UFD1Q92890 307 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 OTULINQ96BN8 352 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 THAP7Q9BT49 309 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 HTATIP2Q9BUP3 242 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SLC12A9Q9BXP2 914 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 ENAMQ9NRM1 1142 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SPATA6Q9NWH7 488 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 ATP6V1HQ9UI12 483 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 DIMT1Q9UNQ2 313 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 ZFR2Q9UPR6 939 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 MRPS7Q9Y2R9 242 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SH3BP5O60239 455 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 CELF2O95319 508 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 EIF4EP06730 217 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 EPHX1P07099 455 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 POU3F2P20265 443 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 PTX3P26022 381 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SLC6A1P30531 599 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 PREPP48147 710 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 GRK1Q15835 563 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 NTRK2Q16620 822 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SZRD1Q7Z422 152 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 DEFB132Q7Z7B7 95 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 MS4A15Q8N5U1 240 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 PIGKQ92643 395 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 KIAA1143Q96AT1 154 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 AP2M1Q96CW1 435 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 FCRL1Q96LA6 429 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SORCS2Q96PQ0 1159 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SEMA3GQ9NS98 782 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 IMP3Q9NV31 184 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 MRPL15Q9P015 296 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SH2B3Q9UQQ2 575 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 GSTK1Q9Y2Q3 226 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 TDRD15B5MCY1 1934 aaKnown RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 GABRPO00591 440 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PPM1BO75688 479 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 SERPINI2O75830 405 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 VNN2O95498 520 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ADAP00813 363 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 LIMS3P0CW19 117 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 LIMS4P0CW20 117 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 GIFP27352 417 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 SLC11A2P49281 568 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 OR10A3P58181 314 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TAS2R50P59544 299 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TUSC1Q2TAM9 212 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PLA1AQ53H76 456 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 KIAA1161Q6NSJ0 714 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 APCDD1Q8J025 514 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 HORMAD2Q8N7B1 307 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 OR7G3Q8NG95 312 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ST8SIA4Q92187 359 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CREB3L1Q96BA8 519 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 KLHL15Q96M94 604 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 C12orf66Q96MD2 445 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ABCG4Q9H172 646 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 STOML2Q9UJZ1 356 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 AUP1Q9Y679 476 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 NME6O75414 186 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CLDN11O75508 207 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 SPAM1P38567 509 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CSKP41240 450 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 GAS1P54826 345 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 KCNA10Q16322 511 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TMEM201Q5SNT2 666 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ANXA8L1Q5VT79 327 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ESPNLQ6ZVH7 1005 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TMPRSS11BQ86T26 416 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 IQCHQ86VS3 1027 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ZFPM2Q8WW38 1151 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 RBPMSQ93062 196 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 C11orf24Q96F05 449 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 WDR89Q96FK6 387 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 FUBP3Q96I24 572 aaKnown RBP eCLIP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 METTL2AQ96IZ6 378 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TBX5Q99593 518 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 KCNN2Q9H2S1 579 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 OR51J1Q9H342 316 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 GHITMQ9H3K2 345 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TESQ9UGI8 421 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 FBXW2Q9UKT8 454 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CORO2BQ9UQ03 480 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 A0A0B4J203 849 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TEX13CA0A0J9YWL9 993 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TCRBV16S1A1N1A0A5B0 115 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ANKDD1BA6NHY2 528 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PRMT3O60678 531 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms