RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 WWTR1Q9GZV5 400 aa9.94□□□□□ -0.82
UBR4-208ENST00000459947 PCDHGB4Q9UN71 923 aa9.94□□□□□ -0.82
UBR4-208ENST00000459947 ERVK-11Q9UQG0 969 aa9.94□□□□□ -0.82
UBR4-208ENST00000459947 ANKRD11Q6UB99 2663 aaPredicted RBP9.94□□□□□ -0.82
UBR4-208ENST00000459947 PCSK5Q92824 1860 aa9.94□□□□□ -0.82
UBR4-208ENST00000459947 PKD1L2Q7Z442 2459 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 C2orf92A0A1B0GVN3 265 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 TCP11X1B4DZS4 312 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 KLRC4-KLRK1H3BQV0 150 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 TROVE2P10155 538 aaKnown RBP eCLIP9.93□□□□□ -0.82
UBR4-208ENST00000459947 GPC1P35052 558 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 KRT20P35900 424 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 PRIM2P49643 509 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 PSMD4P55036 377 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 PRR5P85299 388 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 RFTN2Q52LD8 501 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 PDCD4Q53EL6 469 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 TMEM64Q6YI46 380 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 BNC2Q6ZN30 1099 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 TESCQ96BS2 214 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 CTHRC1Q96CG8 243 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 AKTIPQ9H8T0 292 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 PNPOQ9NVS9 261 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 CNIH4Q9P003 139 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 BCAP29Q9UHQ4 241 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 USH1CQ9Y6N9 552 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 SDHDO14521 159 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 POLR3GO15318 223 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 SASH3O75995 380 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 WDPCPO95876 746 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 DRD5P21918 477 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 FEN1P39748 380 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 FRKP42685 505 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 ANXA11P50995 505 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 SLC37A1P57057 533 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 EFR3AQ14156 821 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 OR1C1Q15619 314 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 ZNF766Q5HY98 468 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 ZNF605Q86T29 641 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 BCORP1Q8N888 145 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 MDS2Q8NDY4 140 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 OR56A1Q8NGH5 318 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 CNRIP1Q96F85 164 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 SCMH1Q96GD3 660 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 MAELQ96JY0 434 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 NUF2Q9BZD4 464 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 FAM120CQ9NX05 1096 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 SH3BP4Q9P0V3 963 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 C19orf53Q9UNZ5 99 aaPredicted RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 OR2W5A6NFC9 320 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 ITGA10O75578 1167 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 ARRB2P32121 409 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 PPICP45877 212 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 EBPQ15125 230 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 CYP4Z2PQ8N1L4 340 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 COQ8BQ96D53 544 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 DDX18Q9NVP1 670 aaKnown RBP9.93□□□□□ -0.82
UBR4-208ENST00000459947 ZIM2Q9NZV7 527 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 LRFN1Q9P244 771 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 TRIM33Q9UPN9 1127 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 AKAP13Q12802 2813 aa9.93□□□□□ -0.82
UBR4-208ENST00000459947 FRG2CA6NGY1 282 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 TO15178 435 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ATP4BP51164 291 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 RAPSNQ13702 412 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.92□□□□□ -0.827e-9■■■■■ 38.4
UBR4-208ENST00000459947 LARP4Q71RC2 724 aaKnown RBP eCLIP9.92□□□□□ -0.825e-14■□□□□ 9.2
UBR4-208ENST00000459947 LCORQ96JN0 433 aaPredicted RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 AIG1Q9NVV5 245 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 EMC8O43402 210 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 SLC28A2O43868 658 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 PRKRAO75569 313 aaKnown RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 CELA2AP08217 269 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 MANFP55145 182 aaKnown RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 TMEM81Q6P7N7 255 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 GK5Q6ZS86 529 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 SLC34A3Q8N130 599 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ZNF615Q8N8J6 731 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 AMDHD1Q96NU7 426 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 RABEP2Q9H5N1 569 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 SACM1LQ9NTJ5 587 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ZNF223Q9UK11 482 aaPredicted RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 PCDHGB3Q9Y5G1 929 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ACOT7O00154 380 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 NME2P1O60361 137 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 FBXO45P0C2W1 286 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 NME2P22392 152 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 PAOXQ6QHF9 649 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 NUP54Q7Z3B4 507 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 ZNF441Q8N8Z8 693 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 GALNT11Q8NCW6 608 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 PPWD1Q96BP3 646 aaKnown RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 BBC3Q96PG8 261 aaPredicted RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 GAL3ST4Q96RP7 486 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 DUSP26Q9BV47 211 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 CCDC134Q9H6E4 229 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 GIN1Q9NXP7 522 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 NTMQ9P121 344 aa9.92□□□□□ -0.82
UBR4-208ENST00000459947 COPG1Q9Y678 874 aaKnown RBP9.92□□□□□ -0.82
UBR4-208ENST00000459947 TTLL8A6PVC2 850 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms