RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TIMMDC1Q9NPL8 285 aa16.04■□□□□ 0.16
USP39-208ENST00000455732 C1orf109Q9NX04 203 aa16.04■□□□□ 0.16
USP39-208ENST00000455732 PLEKHB1Q9UF11 243 aaPredicted RBP16.04■□□□□ 0.16
USP39-208ENST00000455732 PTGDR2Q9Y5Y4 395 aa16.04■□□□□ 0.16
USP39-208ENST00000455732 TEX15Q9BXT5 2789 aa16.04■□□□□ 0.16
USP39-208ENST00000455732 NOTCH2Q04721 2471 aa16.04■□□□□ 0.16
USP39-208ENST00000455732 TMEM233B4DJY2 109 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 ZNF354AO60765 605 aaPredicted RBP16.03■□□□□ 0.16
USP39-208ENST00000455732 DDCP20711 480 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 S1PR1P21453 382 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 SSTR4P31391 388 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 FEN1P39748 380 aaKnown RBP16.03■□□□□ 0.16
USP39-208ENST00000455732 DUSP2Q05923 314 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 MGAT2Q10469 447 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 SH2D4BQ5SQS7 431 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 FAM71E1Q6IPT2 247 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 MDGA2Q7Z553 956 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 DND1Q8IYX4 353 aaKnown RBP16.03■□□□□ 0.16
USP39-208ENST00000455732 POGLUT1Q8NBL1 392 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 C17orf47Q8NEP4 570 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 OR2T11Q8NH01 316 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 ZNF675Q8TD23 568 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 DOK4Q8TEW6 326 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 CTHRC1Q96CG8 243 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 ERP27Q96DN0 273 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 PKNOX2Q96KN3 472 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 LRTM1Q9HBL6 345 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 TAS2R7Q9NYW3 318 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 MAT2BQ9NZL9 334 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 ZNF639Q9UID6 485 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 ERVK-11Q9UQG0 969 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 TMED5Q9Y3A6 229 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 FIS1Q9Y3D6 152 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 POLR3HQ9Y535 204 aaPredicted RBP16.03■□□□□ 0.16
USP39-208ENST00000455732 UNC79Q9P2D8 2635 aa16.03■□□□□ 0.16
USP39-208ENST00000455732 DNAJC13O75165 2243 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 KLRC4-KLRK1H3BQV0 150 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 LSM1O15116 133 aaKnown RBP16.02■□□□□ 0.16
USP39-208ENST00000455732 LRRTM2O43300 516 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 UNC5CO95185 931 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 SERPINE1P05121 402 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 SOX18P35713 384 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 MPP2Q14168 576 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 XKR7Q5GH72 579 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 CRYBG3Q68DQ2 2970 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 LYPD8Q6UX82 237 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 IL20RBQ6UXL0 311 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 GFRALQ6UXV0 394 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 RTL4Q6ZR62 310 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.02■□□□□ 0.16
USP39-208ENST00000455732 SIAH3Q8IW03 269 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 PSD4Q8NDX1 1056 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 TP53INP1Q96A56 240 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 ZNF764Q96H86 408 aaPredicted RBP16.02■□□□□ 0.16
USP39-208ENST00000455732 GAL3ST4Q96RP7 486 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 CCT7Q99832 543 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 OR10A5Q9H207 317 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 SLC35C2Q9NQQ7 365 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 GIMAP4Q9NUV9 329 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 SEC14L3Q9UDX4 400 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 ENTPD4Q9Y227 616 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 CFL2Q9Y281 166 aa16.02■□□□□ 0.16
USP39-208ENST00000455732 ZNF407Q9C0G0 2248 aa16.02■□□□□ 0.15
USP39-208ENST00000455732 C2orf92A0A1B0GVN3 265 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 TMEM114B3SHH9 223 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 PIP5K1BO14986 540 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 SEC22BO75396 215 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 SNUPNO95149 360 aaKnown RBP16.01■□□□□ 0.15
USP39-208ENST00000455732 CBX7O95931 251 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 FBXO45P0C2W1 286 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 LINC00032P0C843 101 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 ZNF791Q3KP31 576 aaPredicted RBP16.01■□□□□ 0.15
USP39-208ENST00000455732 ZNF628Q5EBL2 1059 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 CES4AQ5XG92 561 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 SULF2Q8IWU5 870 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 TAGAPQ8N103 731 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 ZFP62Q8NB50 900 aaPredicted RBP16.01■□□□□ 0.15
USP39-208ENST00000455732 C16orf52Q8NHV5 167 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 PPP1R14CQ8TAE6 165 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 ADIPOR1Q96A54 375 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 EXOSC8Q96B26 276 aaKnown RBP16.01■□□□□ 0.15
USP39-208ENST00000455732 SPACA9Q96E40 222 aaPredicted RBP16.01■□□□□ 0.15
USP39-208ENST00000455732 BRINP2Q9C0B6 783 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 SH2D2AQ9NP31 389 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 ZDHHC2Q9UIJ5 367 aa16.01■□□□□ 0.15
USP39-208ENST00000455732 NCOA6Q14686 2063 aaPredicted RBP16■□□□□ 0.15
USP39-208ENST00000455732 PEX1O43933 1283 aa16■□□□□ 0.15
USP39-208ENST00000455732 ZNF24P17028 368 aa16■□□□□ 0.15
USP39-208ENST00000455732 GRK2P25098 689 aa16■□□□□ 0.15
USP39-208ENST00000455732 MEOX1P50221 254 aa16■□□□□ 0.15
USP39-208ENST00000455732 SLC18A1P54219 525 aa16■□□□□ 0.15
USP39-208ENST00000455732 ALDH6A1Q02252 535 aaKnown RBP16■□□□□ 0.15
USP39-208ENST00000455732 C2orf80Q0P641 193 aa16■□□□□ 0.15
USP39-208ENST00000455732 DUSP8Q13202 625 aa16■□□□□ 0.15
USP39-208ENST00000455732 CASP8Q14790 479 aa16■□□□□ 0.15
USP39-208ENST00000455732 LTB4RQ15722 352 aa16■□□□□ 0.15
USP39-208ENST00000455732 CHI3L2Q15782 390 aa16■□□□□ 0.15
USP39-208ENST00000455732 RNFT1Q5M7Z0 435 aa16■□□□□ 0.15
USP39-208ENST00000455732 FAM180BQ6P0A1 224 aa16■□□□□ 0.15
USP39-208ENST00000455732 FAM111BQ6SJ93 734 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms