RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ZNF304Q9HCX3 659 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 STMN3Q9NZ72 180 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 FAAHO00519 579 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SOX1O00570 391 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 MBTPS2O43462 519 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 AIREO43918 545 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NPPBP16860 134 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 GPNMBQ14956 572 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 LRIT3Q3SXY7 679 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SLC35F1Q5T1Q4 408 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SHQ1Q6PI26 577 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ENDOVQ8N8Q3 282 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 MCFD2Q8NI22 146 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 TESCQ96BS2 214 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 FBXL20Q96IG2 436 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 GPER1Q99527 375 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 MAGIXQ9H6Y5 334 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 RPRD1BQ9NQG5 326 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 GRXCR2A6NFK2 248 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 WWP2O00308 870 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 AREL1O15033 823 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 AKAP8O43823 692 aaKnown RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CDC40O60508 579 aaKnown RBP eCLIP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 HMGN2P05204 90 aaKnown RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CISD3P0C7P0 127 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ITGA3P26006 1051 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 NR0B1P51843 470 aaKnown RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 BTBD16Q32M84 506 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 RPS26P11Q5JNZ5 115 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 RNF220Q5VTB9 566 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TLDC1Q6P9B6 456 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 DNM1P34Q6PK57 102 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SLCO6A1Q86UG4 719 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ZSCAN1Q8NBB4 408 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 GOLM1Q8NBJ4 401 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 FCGR1BQ92637 280 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 GPR78Q96P69 363 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ZDHHC5Q9C0B5 715 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 COMMD4Q9H0A8 199 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 KIR3DX1Q9H7L2 352 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 MCCC2Q9HCC0 563 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CUTCQ9NTM9 273 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TNFRSF10DQ9UBN6 386 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF451Q9Y4E5 1061 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TMX2-CTNND1H3BSU7 103 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 YKT6O15498 198 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 MTHFD2P13995 350 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TACR1P25103 407 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 OR1D4P47884 311 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 METAP1P53582 386 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 REEP5Q00765 189 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ITGADQ13349 1161 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PUM1Q14671 1186 aaKnown RBP eCLIP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TPRG1LQ5T0D9 272 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 NKAIN2Q5VXU1 208 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ASRGL1Q7L266 308 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 DTWD1Q8N5C7 304 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TCEANCQ8N8B7 351 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 OR2T11Q8NH01 316 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CEP76Q8TAP6 659 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CREB3L4Q8TEY5 395 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 FRS2Q8WU20 508 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SNRNP27Q8WVK2 155 aaKnown RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ALG14Q96F25 216 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SPRTNQ9H040 489 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SEC61A2Q9H9S3 476 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 GRHPRQ9UBQ7 328 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ERVK-19Q9WJR5 959 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PTRH2Q9Y3E5 179 aaKnown RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 C2orf92A0A1B0GVN3 265 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 BRINP1O60477 761 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SNX4O95219 450 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PGCP20142 388 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PKLRP30613 574 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 RCVRNP35243 200 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 OMPP47874 163 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 DNASE1L1P49184 302 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ARFIP1P53367 373 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ERV3-1Q14264 604 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PON3Q15166 354 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 RUNDC3AQ59EK9 446 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM215Q68D42 235 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 Q6ZSR9 355 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CLIP4Q8N3C7 705 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 AGBL5Q8NDL9 886 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 OR5D16Q8NGK9 328 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 FANK1Q8TC84 345 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 DIO2Q92813 273 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 UFD1Q92890 307 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 MAP3K3Q99759 626 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 KCNS3Q9BQ31 491 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 PLEKHA1Q9HB21 404 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 SLC39A1Q9NY26 324 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TMEM181Q9P2C4 612 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ADAM29Q9UKF5 820 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 TRBV5-4A0A0C4DH59 114 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 A6NCN8 305 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 ZNF99A8MXY4 864 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-213ENST00000448038 RNF13O43567 381 aa7.01□□□□□ -1.29
SYNE1-213ENST00000448038 CLIC3O95833 236 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms