RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TGM3Q08188 693 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SEC23BQ15437 767 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC27A4Q6P1M0 643 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC30A8Q8IWU4 369 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 CPXM2Q8N436 756 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC7A13Q8TCU3 470 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 MCCC1Q96RQ3 725 aaPredicted RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 TAAR2Q9P1P5 351 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 DEC1Q9P2X7 70 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 GRIP1Q9Y3R0 1128 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 DOCK4Q8N1I0 1966 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 C1orf226A1L170 272 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZNF821O75541 412 aaPredicted RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 SCG5P05408 212 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 C6P13671 934 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PPM1AP35813 382 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 GIPRP48546 466 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PRLHRP49683 370 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 NOGQ13253 232 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC9A5Q14940 896 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SSX1Q16384 188 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 BTBD16Q32M84 506 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 TMEM107Q6UX40 140 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 Q6ZNB5 142 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC9B2Q86UD5 537 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 TIGD4Q8IY51 512 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 TMEM145Q8NBT3 493 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 OR8K5Q8NH50 307 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PPP1R16AQ96I34 528 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SECISBP2Q96T21 854 aaKnown RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 MVB12BQ9H7P6 319 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZFR2Q9UPR6 939 aaKnown RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 MYOFQ9NZM1 2061 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 TRAV6A0A075B6T7 132 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 A0A1W2PPK0 400 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 NDUFS4O43181 175 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PTPN2P17706 415 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PRPH2P23942 346 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ELAVL4P26378 380 aaKnown RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 MTNR1AP48039 350 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZNF33BQ06732 778 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZNF362Q5T0B9 420 aaPredicted RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 FAM71E1Q6IPT2 247 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 CNIH2Q6PI25 160 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 PDZD3Q86UT5 571 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 KLBQ86Z14 1044 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 CADM2Q8N3J6 435 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SLC37A3Q8NCC5 494 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 LILRB4Q8NHJ6 448 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZNF671Q8TAW3 534 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZCCHC10Q8TBK6 192 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 C11orf54Q9H0W9 315 aaPredicted RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 TXNL4BQ9NX01 149 aaKnown RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 TEX10Q9NXF1 929 aaPredicted RBP11.25□□□□□ -0.61
MSH6-204ENST00000445503 MAT2BQ9NZL9 334 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 ZNF780BQ9Y6R6 833 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 SCN4AP35499 1836 aa11.25□□□□□ -0.61
MSH6-204ENST00000445503 FAM183AA6NL82 134 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ZAR1LA6NP61 321 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 HPGDSO60760 199 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SAGP10523 405 aaPredicted RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 PRG2P13727 222 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 MAT2AP31153 395 aaKnown RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 HTR3AP46098 478 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 KHKP50053 298 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 METAP1P53582 386 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 WDR5P61964 334 aaKnown RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC3A1Q07837 685 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ZNF750Q32MQ0 723 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 BTN2A1Q7KYR7 527 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 PLPP6Q8IY26 295 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 LRRC17Q8N6Y2 441 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ZNF557Q8N988 423 aaPredicted RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 OR4F15Q8NGB8 312 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 OR52P1PQ8NH57 321 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 HHATLQ9HCP6 504 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ZC4H2Q9NQZ6 224 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SATB2Q9UPW6 733 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ORC5O43913 435 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ALPPP05187 535 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SYN1P17600 705 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 DDCP20711 480 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 CBLP22681 906 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 CTNNB1P35222 781 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 GPR68Q15743 365 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 MEDAGQ5VYS4 303 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 TCTN3Q6NUS6 607 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC36A4Q6YBV0 504 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 GLCCI1Q86VQ1 547 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 DCUN1D3Q8IWE4 304 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 IL17RDQ8NFM7 739 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 OR52L1Q8NGH7 329 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 FBLIM1Q8WUP2 373 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC35B4Q969S0 331 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 DPH7Q9BTV6 452 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 RNF121Q9H920 327 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 C3orf14Q9HBI5 128 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 THSD1Q9NS62 852 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 GPATCH2Q9NW75 528 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SPATA2Q9UM82 520 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms