RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 C4orf51C9J302 202 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 H0YIG0 161 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 HMGN4O00479 90 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 BCKDKO14874 412 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 GADD45GO95257 159 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 OXSR1O95747 527 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 CER1O95813 267 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 TFPTP0C1Z6 253 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 EPHA8P29322 1005 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 NR1H2P55055 460 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 RPS26P62854 115 aaKnown RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 TUBA4AP68366 448 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 KCNJ10P78508 379 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 HSD11B2P80365 405 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 VLDLRP98155 873 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 ZNF155Q12901 538 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 CLPPQ16740 277 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 DEFB110Q30KQ9 67 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 ZIK1Q3SY52 487 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 RBM48Q5RL73 367 aaKnown RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 DEPDC4Q8N2C3 294 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 OR10G2Q8NGC3 310 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 FAM110BQ8TC76 370 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 ZNF354BQ96LW1 612 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 C10orf90Q96M02 699 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 ZNF681Q96N22 645 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 DGAT2Q96PD7 388 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 OR7D2Q96RA2 312 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 NDC1Q9BTX1 674 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 TRIM4Q9C037 500 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 SLC7A5P2Q9GIP4 190 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 TOR3AQ9H497 397 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 RIBC2Q9H4K1 309 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 KRCC1Q9NPI7 259 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 EQTNQ9NQ60 294 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 POLE3Q9NRF9 147 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 FBXO4Q9UKT5 387 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 C19orf53Q9UNZ5 99 aaPredicted RBP5.67□□□□□ -1.5
VPS50-205ENST00000441602 SH3GLB1Q9Y371 365 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 TESMINQ9Y4I5 508 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 MMACHCQ9Y4U1 282 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 SNX5Q9Y5X3 404 aa5.67□□□□□ -1.5
VPS50-205ENST00000441602 LRP4O75096 1905 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 IGHV1OR21-1A0A087WYE8 117 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 UPK1AO00322 258 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 CTNSO60931 367 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 NOL3O60936 208 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 PRKRAO75569 313 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 OR2B3O76000 313 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 CFIP05156 583 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SYPP08247 313 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 PNLIPP16233 465 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 KCNJ5P48544 419 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 PSMD4P55036 377 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 CDH12P55289 794 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 NUP107P57740 925 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ADARB1P78563 741 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 PPP2R2BQ00005 443 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ACY1Q03154 408 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SLC13A2Q13183 592 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 AMZ1Q400G9 498 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 MFSD12Q6NUT3 480 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 PRSS42Q7Z5A4 293 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 GALNT10Q86SR1 603 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 COX18Q8N8Q8 333 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SLC9A6Q92581 669 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 KAT2AQ92830 837 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 RBM18Q96H35 190 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 SMURF2Q9HAU4 748 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ADAP2Q9NPF8 381 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 GPATCH2Q9NW75 528 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SCN3BQ9NY72 215 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 NTMQ9P121 344 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 KLHL3Q9UH77 587 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 NDOR1Q9UHB4 597 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 GMEB2Q9UKD1 530 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ABCG2Q9UNQ0 655 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SRPK3Q9UPE1 567 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ERVK-11Q9UQG0 969 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 GMPPBQ9Y5P6 360 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SNX11Q9Y5W9 270 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 GPC6Q9Y625 555 aaPredicted RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 U3KQV3 271 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 A0A1B0GTQ1 180 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 EIF4E1BA6NMX2 242 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 H3BNH8 94 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SGK494L7N484 410 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 FAAHO00519 579 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 AP3D1O14617 1153 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 TOX3O15405 576 aaPredicted RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 PLOD3O60568 738 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 UGT2B17O75795 530 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SMNDC1O75940 238 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS50-205ENST00000441602 SEC24DO94855 1032 aaPredicted RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 MFN2O95140 757 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 SNAP29O95721 258 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 ATP1B1P05026 303 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 H1F0P07305 194 aaKnown RBP5.66□□□□□ -1.5
VPS50-205ENST00000441602 FESP07332 822 aa5.66□□□□□ -1.5
VPS50-205ENST00000441602 TNNI3P19429 210 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms