RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 NXF2Q9GZY0 626 aaKnown RBP13.4□□□□□ -0.26
LIMD1-202ENST00000440097 GABARAPL1Q9H0R8 117 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 TTYH1Q9H313 450 aaPredicted RBP13.4□□□□□ -0.26
LIMD1-202ENST00000440097 SLC6A20Q9NP91 592 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 EHD3Q9NZN3 535 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 NDRG4Q9ULP0 352 aaKnown RBP13.4□□□□□ -0.26
LIMD1-202ENST00000440097 MMP17Q9ULZ9 603 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 CYP8B1Q9UNU6 501 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 SAMHD1Q9Y3Z3 626 aaKnown RBP13.4□□□□□ -0.26
LIMD1-202ENST00000440097 PLXND1Q9Y4D7 1925 aa13.4□□□□□ -0.26
LIMD1-202ENST00000440097 TRBC2A0A5B9 178 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 AP3D1O14617 1153 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 MED26O95402 600 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 HOXB6P17509 224 aaKnown RBP13.39□□□□□ -0.27
LIMD1-202ENST00000440097 IL1RNP18510 177 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 HTR3AP46098 478 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 ZNF542PQ5EBM4 170 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 NXNL2Q5VZ03 156 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 Q6ZSR6 202 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 GPR155Q7Z3F1 870 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 DENND6BQ8NEG7 585 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 SIGLEC11Q96RL6 698 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 KLHL31Q9H511 634 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 KIF17Q9P2E2 1029 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 LRIT2A6NDA9 550 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 CLEC3AO75596 197 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 TNFRSF1BP20333 461 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 GPC1P35052 558 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 PCGF2P35227 344 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 RAB8AP61006 207 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 SRP54P61011 504 aaKnown RBP13.39□□□□□ -0.27
LIMD1-202ENST00000440097 ZFP69Q49AA0 526 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 CYP27C1Q4G0S4 372 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 KIAA1614Q5VZ46 1190 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 TNFAIP8L2Q6P589 184 aaPredicted RBP13.39□□□□□ -0.27
LIMD1-202ENST00000440097 TRIM69Q86WT6 500 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 OR8K5Q8NH50 307 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 GOT1L1Q8NHS2 421 aaPredicted RBP13.39□□□□□ -0.27
LIMD1-202ENST00000440097 IPCEF1Q8WWN9 437 aaPredicted RBP13.39□□□□□ -0.27
LIMD1-202ENST00000440097 DNASE1L2Q92874 299 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 CLIP3Q96DZ5 547 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 NUAK2Q9H093 628 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 CXorf36Q9H7Y0 433 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 REEP1Q9H902 201 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 LHX9Q9NQ69 397 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 C14orf119Q9NWQ9 140 aa13.39□□□□□ -0.27
LIMD1-202ENST00000440097 GSAPA4D1B5 854 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 BTN3A3O00478 584 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 SOX1O00570 391 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 PCDHGA12O60330 932 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 MRPS14O60783 128 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ERAL1O75616 437 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 C21orf33P30042 268 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TP53BP2Q13625 1128 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CCINQ13939 588 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CDK10Q15131 360 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TIGD6Q17RP2 521 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TJAP1Q5JTD0 557 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 NDUFAF5Q5TEU4 345 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TSPYL5Q86VY4 417 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 UBQLNLQ8IYU4 475 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 APH1BQ8WW43 257 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 FCRL4Q96PJ5 515 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 DEPDC7Q96QD5 511 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TEFMQ96QE5 360 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CHST8Q9H2A9 424 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 C6orf106Q9H6K1 298 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 NT5DC2Q9H857 520 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 PDP1Q9P0J1 537 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ZNF624Q9P2J8 865 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 WBP11Q9Y2W2 641 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 A3GALT2U3KPV4 340 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 SNRNP200O75643 2136 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 WASHC1A8K0Z3 465 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 PRKRAO75569 313 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CHRM5P08912 532 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 DDX5P17844 614 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 NDUFS1P28331 727 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 PEBP1P30086 187 aaKnown RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 OR1E2P47887 323 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 MVDP53602 400 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CRYBA2P53672 197 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ABATP80404 500 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CDK6Q00534 326 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ILF3Q12906 894 aaKnown RBP eCLIP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 SLC9A5Q14940 896 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CEACAM20Q6UY09 585 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 WASH2PQ6VEQ5 465 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 CREB3L4Q8TEY5 395 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 ASB12Q8WXK4 309 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 UCN3Q969E3 161 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 SCARF2Q96GP6 870 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TMEM246Q9BRR3 403 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 COPS4Q9BT78 406 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 POLMQ9NP87 494 aaPredicted RBP13.38□□□□□ -0.27
LIMD1-202ENST00000440097 SLAMF7Q9NQ25 335 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 TMEM184CQ9NVA4 438 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 NPAP1Q9NZP6 1156 aa13.38□□□□□ -0.27
LIMD1-202ENST00000440097 FBXW2Q9UKT8 454 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms