RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 WDR45Q9Y484 360 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 CAPNS1P04632 268 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 FESP07332 822 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 MAGEA2P43356 314 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 COPZ1P61923 177 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 SHC2P98077 582 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 GAB1Q13480 694 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 DEF8Q6ZN54 512 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 Q7L0L9 218 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 VN1R4Q7Z5H5 301 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 KCT2Q8NC54 265 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 OR7G1Q8NGA0 311 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 ZNF675Q8TD23 568 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 GPR151Q8TDV0 419 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 IPCEF1Q8WWN9 437 aaPredicted RBP7.91□□□□□ -1.14
USP54-203ENST00000418501 DAZLQ92904 295 aaKnown RBP7.91□□□□□ -1.14
USP54-203ENST00000418501 MYDGFQ969H8 173 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 ELP4Q96EB1 424 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 PLEKHA8Q96JA3 519 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 EQTNQ9NQ60 294 aa7.91□□□□□ -1.14
USP54-203ENST00000418501 CHST10O43529 356 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ITGAMP11215 1152 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 IL7RP16871 459 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 GALNSP34059 522 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 DCTP40126 519 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 CDH12P55289 794 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 PLEKHM3Q6ZWE6 761 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ZNF605Q86T29 641 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 PTOV1Q86YD1 416 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 KBTBD2Q8IY47 623 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 TFAP2CQ92754 450 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 RIT1Q92963 219 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ANKRD19PQ9H560 264 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ADAP2Q9NPF8 381 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 RYDENQ9NUL5 291 aaKnown RBP7.9□□□□□ -1.14
USP54-203ENST00000418501 PILRAQ9UKJ1 303 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 RARRES3Q9UL19 164 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 C19orf53Q9UNZ5 99 aaPredicted RBP7.9□□□□□ -1.14
USP54-203ENST00000418501 CPED1A4D0V7 1026 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ARRDC5A6NEK1 342 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 GLOD5A6NK44 160 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ZNF749O43361 778 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 LCN1P31025 176 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 CTSKP43235 329 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 GZMMP51124 257 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 COX10Q12887 443 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 KEAP1Q14145 624 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 TPRG1LQ5T0D9 272 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 OR9Q1Q8NGQ5 310 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 PIGXQ8TBF5 258 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 GUCD1Q96NT3 240 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 KLHL25Q9H0H3 589 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 TCEAL2Q9H3H9 227 aaPredicted RBP7.9□□□□□ -1.14
USP54-203ENST00000418501 DUSP22Q9NRW4 184 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 KLHL3Q9UH77 587 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 ACSL6Q9UKU0 697 aa7.9□□□□□ -1.14
USP54-203ENST00000418501 OR10H3O60404 316 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 ADAP00813 363 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 HMGN2P05204 90 aaKnown RBP7.9□□□□□ -1.15
USP54-203ENST00000418501 ALAS2P22557 587 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 PTPN6P29350 595 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 CSTF2P33240 577 aaKnown RBP eCLIP7.9□□□□□ -1.15
USP54-203ENST00000418501 CDK9P50750 372 aaKnown RBP7.9□□□□□ -1.15
USP54-203ENST00000418501 TRAM2Q15035 370 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 ARHGAP40Q5TG30 622 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 WDR74Q6RFH5 385 aaPredicted RBP7.9□□□□□ -1.15
USP54-203ENST00000418501 ZNF550Q7Z398 422 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 PRSS42Q7Z5A4 293 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 UBE3DQ7Z6J8 389 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 HORMAD2Q8N7B1 307 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 HDAC2Q92769 488 aaKnown RBP7.9□□□□□ -1.15
USP54-203ENST00000418501 SLC38A2Q96QD8 506 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 MAP3K3Q99759 626 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 PIGUQ9H490 435 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 CUTCQ9NTM9 273 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 CLN6Q9NWW5 311 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 SATB2Q9UPW6 733 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 TMEM5Q9Y2B1 443 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 BTBD3Q9Y2F9 522 aa7.9□□□□□ -1.15
USP54-203ENST00000418501 IGKV1-8A0A0C4DH67 115 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 SOX1O00570 391 aaPredicted RBP7.89□□□□□ -1.15
USP54-203ENST00000418501 SOCS2O14508 198 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 JRKO75564 520 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 PRSS23O95084 383 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 C8orf89P0DMQ9 161 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 PVRP15151 417 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 PRKAR1BP31321 381 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 GABARAPL2P60520 117 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 SIM1P81133 766 aaPredicted RBP7.89□□□□□ -1.15
USP54-203ENST00000418501 TFF2Q03403 129 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 DECR1Q16698 335 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 SNAP47Q5SQN1 464 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 XKR5Q6UX68 686 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 CARM1Q86X55 608 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 C1orf210Q8IVY1 113 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 CA13Q8N1Q1 262 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 VWA5B2Q8N398 1253 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 DNAJC22Q8N4W6 341 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 OR9A2Q8NGT5 310 aa7.89□□□□□ -1.15
USP54-203ENST00000418501 ZNF639Q9UID6 485 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms