RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 MAP4K2Q12851 820 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 HEPACAMQ14CZ8 416 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 EXOSC7Q15024 291 aaKnown RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 LTB4RQ15722 352 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 HLA-DQA1Q5Y7H0 255 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 TMEM64Q6YI46 380 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 ZCCHC23Q6ZST2 131 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 CCDC116Q8IYX3 515 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 LRRC25Q8N386 305 aaPredicted RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 VWA5B2Q8N398 1253 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF441Q8N8Z8 693 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 SIMC1Q8NDZ2 872 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 OR7G1Q8NGA0 311 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 RELTQ969Z4 430 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 SPACA9Q96E40 222 aaPredicted RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 TRMOQ9BU70 441 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 PFDN4Q9NQP4 134 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 SACM1LQ9NTJ5 587 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 PLEKHB1Q9UF11 243 aaPredicted RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 BCAP29Q9UHQ4 241 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 POLR3HQ9Y535 204 aaPredicted RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 UTP20O75691 2785 aaKnown RBP13.67□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF407Q9C0G0 2248 aa13.67□□□□□ -0.22
LIMS4-201ENST00000413601 RGS16O15492 202 aaPredicted RBP13.66□□□□□ -0.22
LIMS4-201ENST00000413601 TYROBPO43914 113 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 NPHS1O60500 1241 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ZG16O60844 167 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 SEC22BO75396 215 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 RSL1D1O76021 490 aaKnown RBP13.66□□□□□ -0.22
LIMS4-201ENST00000413601 FBXO45P0C2W1 286 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 PIGAP37287 484 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 CA7P43166 264 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 DNASE1L1P49184 302 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 PER3P56645 1201 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 PLGLB1Q02325 96 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF763Q0D2J5 394 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 C2orf80Q0P641 193 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 DUSP8Q13202 625 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.66□□□□□ -0.22
LIMS4-201ENST00000413601 TRMT12Q53H54 448 aaKnown RBP13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ARL13AQ5H913 290 aaPredicted RBP13.66□□□□□ -0.22
LIMS4-201ENST00000413601 SLC22A10Q63ZE4 541 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 KANK2Q63ZY3 851 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 FAM47EQ6ZV65 393 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 SPPL2CQ8IUH8 684 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 TAGAPQ8N103 731 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 GHDCQ8N2G8 530 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 FAM13CQ8NE31 585 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 OR52N2Q8NGI0 321 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 OR5M3Q8NGP4 307 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ADIPOR1Q96A54 375 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 TP53INP1Q96A56 240 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 CTHRC1Q96CG8 243 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 MAGED4Q96JG8 741 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 FAM173AQ9BQD7 235 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 TUBB1Q9H4B7 451 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 SH2D2AQ9NP31 389 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 SENP1Q9P0U3 644 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF639Q9UID6 485 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 DTX4Q9Y2E6 619 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 ZNF835Q9Y2P0 537 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 DNAJC15Q9Y5T4 150 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 DNAJC13O75165 2243 aa13.66□□□□□ -0.22
LIMS4-201ENST00000413601 USP9YO00507 2555 aaPredicted RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CYSRT1A8MQ03 144 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 FAM166BA8MTA8 275 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TMEM233B4DJY2 109 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 SLC28A1O00337 649 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CCL21O00585 134 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CDC40O60508 579 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PDE9AO76083 593 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CLDN1O95832 211 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CBX7O95931 251 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TUBBP07437 444 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 LINC00032P0C843 101 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 ABOP16442 354 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PCSK2P16519 638 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 GPX3P22352 226 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 GSTM5P46439 218 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CASP6P55212 293 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PPIAP62937 165 aaKnown RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 MRPS35P82673 323 aaKnown RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 C3AR1Q16581 482 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PRSS53Q2L4Q9 553 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CMPK2Q5EBM0 449 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CEP85LQ5SZL2 805 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 HIST2H2BCQ6DN03 193 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 FAM71E1Q6IPT2 247 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 NOXRED1Q6NXP6 359 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 BNC2Q6ZN30 1099 aaPredicted RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 GK5Q6ZS86 529 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CHERPQ8IWX8 916 aaKnown RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 DND1Q8IYX4 353 aaKnown RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 OR10G3Q8NGC4 313 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 OR2T11Q8NH01 316 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 FAM76AQ8TAV0 307 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 AGR3Q8TD06 166 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 PAQR8Q8TEZ7 354 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 339.2 ms