RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PARP16Q8N5Y8 322 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 SCARB1Q8WTV0 552 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 SPACA7Q96KW9 195 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 SLC25A32Q9H2D1 315 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 BPIFA1Q9NP55 256 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 FZD10Q9ULW2 581 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 KPTNQ9Y664 436 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 KNDC1Q76NI1 1749 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 AP1G1O43747 822 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 POP4O95707 220 aaKnown RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 ALDOBP05062 364 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 ELK1P19419 428 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 CD81P60033 236 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 TSSK4Q6SA08 328 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 BRIX1Q8TDN6 353 aaKnown RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 UPRTQ96BW1 309 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 TBL1XR1Q9BZK7 514 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 WDR26Q9H7D7 661 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 KCNS2Q9ULS6 477 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 ANKRD34BA5PLL1 514 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 RPL23AP62750 156 aaKnown RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 SLAMF1Q13291 335 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 UBXN2BQ14CS0 331 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 CES5AQ6NT32 575 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 MRPL10Q7Z7H8 261 aaKnown RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 CILP2Q8IUL8 1156 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 NKX6-2Q9C056 277 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 ABHD16BQ9H3Z7 469 aa12.36□□□□□ -0.43
COL6A3-206ENST00000409809 UBE2J1Q9Y385 318 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-206ENST00000409809 MOXD2PA6NHM9 499 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CCDC85CA6NKD9 419 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TPST2O60704 377 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CNR1P21554 472 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 NKX3-2P78367 333 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MADCAM1Q13477 382 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RPL22L1Q6P5R6 122 aaKnown RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TIPARPQ7Z3E1 657 aaKnown RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TRMT10AQ8TBZ6 339 aaKnown RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 LRCH3Q96II8 777 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MED18Q9BUE0 208 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 NTN4Q9HB63 628 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 UNC119BA6NIH7 251 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 NFKBIEO00221 500 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CXCL11O14625 94 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TBL1XO60907 577 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 BCHEP06276 602 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RAB5AP20339 215 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 HRH2P25021 359 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 GPR157Q5UAW9 335 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CD300LGQ6UXG3 332 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 NFKBIDQ8NI38 313 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ARHGAP39Q9C0H5 1083 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ADAM19Q9H013 955 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RSU1Q15404 277 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 PCGF3Q3KNV8 242 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 C1orf52Q8N6N3 182 aaKnown RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 C2CD4AQ8NCU7 369 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 IL31RAQ8NI17 732 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ZFAND1Q8TCF1 268 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MICU1Q9BPX6 476 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 PINK1Q9BXM7 581 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 PRELID3BQ9Y3B1 194 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 FAM96BQ9Y3D0 163 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MEN1O00255 615 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 SEPT4O43236 478 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 GNRHRP30968 328 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MASP1P48740 699 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 DECR1Q16698 335 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 C12orf57Q99622 126 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CMKLR1Q99788 373 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 OR1F1O43749 312 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 FAM163BP0C2L3 166 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 FAM111BQ6SJ93 734 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 IQCF1Q8N6M8 205 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 NLGN2Q8NFZ4 835 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 DDX1Q92499 740 aaKnown RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ARPC5LQ9BPX5 153 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 KLK4Q9Y5K2 254 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RIMBP3CA6NJZ7 1639 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RIMBP3BA6NNM3 1639 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 RIMBP3Q9UFD9 1639 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TSPAN11A1L157 253 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 VSTM5A8MXK1 200 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 E7ESA3 106 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CREB1P16220 341 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 HLA-DMAP28067 261 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 HBG1P69891 147 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 HBG2P69892 147 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 CDC20Q12834 499 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MLLT11Q13015 90 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 GINS1Q14691 196 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM173Q86WV6 379 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 LRRC46Q96FV0 321 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ASB6Q9NWX5 421 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MON2Q7Z3U7 1717 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 MSCO60682 206 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF41P51814 821 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-206ENST00000409809 IL13RA1P78552 427 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 GPR142Q7Z601 462 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms