RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 OR4C15Q8NGM1 316 aa17.82■□□□□ 0.44
USP39-202ENST00000409025 OR7D2Q96RA2 312 aa17.82■□□□□ 0.44
USP39-202ENST00000409025 ACTRT3Q9BYD9 372 aa17.82■□□□□ 0.44
USP39-202ENST00000409025 EQTNQ9NQ60 294 aa17.82■□□□□ 0.44
USP39-202ENST00000409025 DDX18Q9NVP1 670 aaKnown RBP17.82■□□□□ 0.44
USP39-202ENST00000409025 PCDHGA8Q9Y5G5 932 aa17.82■□□□□ 0.44
USP39-202ENST00000409025 J3KTA2 159 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 BMP10O95393 424 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 RECKO95980 971 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 ELK4P28324 431 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 POLR2IP36954 125 aaKnown RBP17.81■□□□□ 0.44
USP39-202ENST00000409025 SHC2P98077 582 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 DMWDQ09019 674 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 PUM1Q14671 1186 aaKnown RBP eCLIP17.81■□□□□ 0.44
USP39-202ENST00000409025 GPAT3Q53EU6 434 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 PRAMEF8Q5VWM4 474 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 PRAMEF7Q5VXH5 474 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 OR7G2Q8NG99 324 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 OR5T3Q8NGG3 340 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 OR52J3Q8NH60 311 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 APOBEC4Q8WW27 367 aaKnown RBP17.81■□□□□ 0.44
USP39-202ENST00000409025 ZNF354BQ96LW1 612 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 UCKL1Q9NWZ5 548 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 NTMQ9P121 344 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 CLCA2Q9UQC9 943 aa17.81■□□□□ 0.44
USP39-202ENST00000409025 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 A0A0G2JPF8 293 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 RHPN2P1A8MT19 583 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 HNRNPCL2B2RXH8 293 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 HNRNPCL3B7ZW38 293 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 SGK494L7N484 410 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 CYR61O00622 381 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 HNRNPCL4P0DMR1 293 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 ETS2P15036 469 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 RAB38P57729 211 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 MICAQ29983 383 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 EXOC3L2Q2M3D2 409 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 RBM48Q5RL73 367 aaKnown RBP17.8■□□□□ 0.44
USP39-202ENST00000409025 ZNF605Q86T29 641 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 TTC29Q8NA56 475 aaPredicted RBP17.8■□□□□ 0.44
USP39-202ENST00000409025 SETD9Q8NE22 299 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 OR10G2Q8NGC3 310 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 TANKQ92844 425 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 GIMAP5Q96F15 307 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 MS4A4EQ96PG1 132 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 BTBD2Q9BX70 525 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 ANKRA2Q9H9E1 313 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 PTGFRNQ9P2B2 879 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 LIPT1Q9Y234 373 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 KNL1Q8NG31 2342 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 TRIM64CA6NLI5 447 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 GADD45GO95257 159 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 CHRM4P08173 479 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 ANXA8P13928 327 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 RYKP34925 604 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 MAN2A2P49641 1150 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 FUT5Q11128 374 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 COL9A2Q14055 689 aaPredicted RBP17.8■□□□□ 0.44
USP39-202ENST00000409025 KEAP1Q14145 624 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 PRTGQ2VWP7 1150 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 C6orf132Q5T0Z8 1188 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 ATAD3BQ5T9A4 648 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 HDAC2Q92769 488 aaKnown RBP17.8■□□□□ 0.44
USP39-202ENST00000409025 MYCBPQ99417 103 aaPredicted RBP17.8■□□□□ 0.44
USP39-202ENST00000409025 ACER3Q9NUN7 267 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 CALML5Q9NZT1 146 aa17.8■□□□□ 0.44
USP39-202ENST00000409025 DUXAA6NLW8 204 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 RDH16O75452 317 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 GPR75O95800 540 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 CTSBP07858 339 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 CYP4B1P13584 511 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 HMGA2P52926 109 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 EPHA4P54764 986 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 SKP1P63208 163 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 ID2Q02363 134 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 GANABQ14697 944 aaKnown RBP17.79■□□□□ 0.44
USP39-202ENST00000409025 NDUFA9Q16795 377 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 OR2L13Q8N349 312 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 ARHGEF39Q8N4T4 335 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 OR9A4Q8NGU2 314 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 ADAMTS15Q8TE58 950 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 PHF10Q8WUB8 498 aaKnown RBP17.79■□□□□ 0.44
USP39-202ENST00000409025 TGM7Q96PF1 710 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 FEVQ99581 238 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 YIPF3Q9GZM5 350 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 ADNPQ9H2P0 1102 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 KCNE3Q9Y6H6 103 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 CCDC88CQ9P219 2028 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 SPAG17Q6Q759 2223 aa17.79■□□□□ 0.44
USP39-202ENST00000409025 TLCD2A6NGC4 264 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 KIF1CO43896 1103 aaKnown RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 FGF17O60258 216 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 LDB3O75112 727 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 AGR2O95994 175 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 MLLT3P42568 568 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 ALDH3B2P48448 385 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 CLK3P49761 638 aaKnown RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 HLCSP50747 726 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 ISL1P61371 349 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 CD47Q08722 323 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms