RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 EPPINO95925 133 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 P2RX3P56373 397 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 SNRPGP62308 76 aaKnown RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 TMEM145Q8NBT3 493 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 SIMC1Q8NDZ2 872 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 OR4K5Q8NGD3 323 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 CDCP1Q9H5V8 836 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 CUEDC1Q9NWM3 386 aaPredicted RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 POP4O95707 220 aaKnown RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 ADAP00813 363 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 C1GALT1C1LP0DN25 315 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 DDX5P17844 614 aaKnown RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 MAPK8P45983 427 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 WDR5P61964 334 aaKnown RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 MLLT11Q13015 90 aaPredicted RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 DDI2Q5TDH0 399 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 TTC23LQ6PF05 361 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 LAPTM4BQ86VI4 370 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 CRIPAKQ8N1N5 446 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 BBS1Q8NFJ9 593 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 OR8J1Q8NGP2 316 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 TREX2Q9BQ50 279 aaPredicted RBP19.84■□□□□ 0.77
CTCF-202ENST00000401394 KLHL42Q9P2K6 505 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 TRPC4Q9UBN4 977 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 SLC23A1Q9UHI7 598 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 SCN5AQ14524 2016 aa19.84■□□□□ 0.77
CTCF-202ENST00000401394 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 ZC3H12DA2A288 527 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 ISM1B1AKI9 464 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 LEFTY2O00292 366 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 SERPIND1P05546 499 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 TIMP2P16035 220 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 UQCRC1P31930 480 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 GIPRP48546 466 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 GAS1P54826 345 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 HENMT1Q5T8I9 393 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 XKRXQ6PP77 449 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 OR8D4Q8NGM9 314 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 SMAP2Q8WU79 429 aaPredicted RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 BTN2A2Q8WVV5 523 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 AP2M1Q96CW1 435 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 RNFT2Q96EX2 444 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 PDXPQ96GD0 296 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 MSLNLQ96KJ4 702 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 SLC46A2Q9BY10 475 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 MRPL17Q9NRX2 175 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 MAT2BQ9NZL9 334 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 ZNF197O14709 1029 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 SLC2A10O95528 541 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 RPLP2P05387 115 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 PIPP12273 146 aaPredicted RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 ENDOUP21128 410 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 C1DQ13901 141 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 DNAJC5GQ8N7S2 189 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 KCTD7Q96MP8 289 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 WDFY2Q96P53 400 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 MAN2C1Q9NTJ4 1040 aa19.83■□□□□ 0.77
CTCF-202ENST00000401394 SF3B6Q9Y3B4 125 aaKnown RBP19.83■□□□□ 0.77
CTCF-202ENST00000401394 ZNF106Q9H2Y7 1883 aaKnown RBP19.83■□□□□ 0.76
CTCF-202ENST00000401394 EIF3FO00303 357 aaPredicted RBP19.83■□□□□ 0.76
CTCF-202ENST00000401394 MPZL2O60487 215 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 ATG13O75143 517 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 CELP19835 753 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 MESP2Q0VG99 397 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 KIAA1161Q6NSJ0 714 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 NR2C2APQ86WQ0 139 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 VN1R2Q8NFZ6 395 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 MTERF3Q96E29 417 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 MCOLN1Q9GZU1 580 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 TDP1Q9NUW8 608 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 LSM7Q9UK45 103 aaKnown RBP19.83■□□□□ 0.76
CTCF-202ENST00000401394 CLEC4AQ9UMR7 237 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 KCNE3Q9Y6H6 103 aa19.83■□□□□ 0.76
CTCF-202ENST00000401394 PQBP1O60828 265 aaKnown RBP19.82■□□□□ 0.76
CTCF-202ENST00000401394 PAHP00439 452 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 ALPPP05187 535 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 CYP2A6P11509 494 aaPredicted RBP19.82■□□□□ 0.76
CTCF-202ENST00000401394 PTX3P26022 381 aaPredicted RBP19.82■□□□□ 0.76
CTCF-202ENST00000401394 CCR2P41597 374 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 MAP2K3P46734 347 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 SLC6A11P48066 632 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 ARPC4P59998 168 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 ZNF628Q5EBL2 1059 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 TOR1AIP1Q5JTV8 583 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 FAM27D1Q5T7N8 215 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 ELMOD2Q8IZ81 293 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 GLYATL1Q969I3 302 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 LMLNQ96KR4 655 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 HS3ST2Q9Y278 367 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 KIAA1671Q9BY89 1806 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 IFNA14P01570 189 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 SLC9A3P48764 834 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 EPHB3P54753 998 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 ZNF730Q6ZMV8 503 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 LRRTM4Q86VH4 590 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 OR5AR1Q8NGP9 310 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 TESQ9UGI8 421 aaKnown RBP19.82■□□□□ 0.76
CTCF-202ENST00000401394 PPIL1Q9Y3C6 166 aa19.82■□□□□ 0.76
CTCF-202ENST00000401394 TCF20Q9UGU0 1960 aaKnown RBP19.82■□□□□ 0.76
CTCF-202ENST00000401394 FAM240BA0A1B0GVZ2 78 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms