RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C9JVG2 144 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 E5RJQ4 531 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CHEK1O14757 476 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NBR2O15453 112 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OR5F1O95221 314 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NTN1O95631 604 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RORAP35398 523 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 GLIPR1P48060 266 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CCT3P49368 545 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TPMTP51580 245 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LIMK2P53671 638 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CD81P60033 236 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 YWHAGP61981 247 aaKnown RBP eCLIP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM132DQ14C87 1099 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 EXOSC7Q15024 291 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 AMZ1Q400G9 498 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ARMCX4Q5H9R4 360 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ENTPD8Q5MY95 495 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LIPJQ5W064 366 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SLC25A25Q6KCM7 469 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM53Q6P2H8 277 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RNASEKQ6P5S7 137 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TTC23LQ6PF05 361 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LEKR1Q6ZMV7 388 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CENPUQ71F23 418 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 MMD2Q8IY49 270 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NPEPL1Q8NDH3 523 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF548Q8NEK5 533 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TRPV1Q8NER1 839 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OR4K1Q8NGD4 311 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CDC26Q8NHZ8 85 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ST8SIA1Q92185 356 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 HPDLQ96IR7 371 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 VSTM2LQ96N03 204 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TECTBQ96PL2 329 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CCT8L2Q96SF2 557 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SH3GL3Q99963 347 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ACTL8Q9H568 366 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RNF146Q9NTX7 359 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 HIF1ANQ9NWT6 349 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SLC2A8Q9NY64 477 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 HACD3Q9P035 362 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ERVK-18Q9QC07 812 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF639Q9UID6 485 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 FBXL2Q9UKC9 423 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SATB2Q9UPW6 733 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ERVK-19Q9WJR5 959 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ABCA10Q8WWZ4 1543 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 INSRP06213 1382 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 RAD50Q92878 1312 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CNTNAP2Q9UHC6 1331 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 IQANK1A0A1B0GTG1 560 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ESYT2A0FGR8 921 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CD8B2A6NJW9 211 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 BTBD19C9JJ37 291 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 GOLGA6L19H0YKK7 550 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 HIP1O00291 1037 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 HDAC3O15379 428 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SYT7O43581 403 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 DUX1O43812 170 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CLN5O75503 358 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 GRAP2O75791 330 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CABYRO75952 493 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TSPAN12O95859 305 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 APRTP07741 180 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 LYNP07948 512 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CT45A8P0DMV1 189 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CT45A9P0DMV2 189 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 GP9P14770 177 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ANPEPP15144 967 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 LAP3P28838 519 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 GJB2P29033 226 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 BDKRB2P30411 391 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TNFSF8P32971 234 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 EVI2BP34910 448 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CYLC1P35663 651 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 MAP2K2P36507 400 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CLDN20P56880 219 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 C21orf59P57076 290 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TAS2R38P59533 333 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 EEF1A2Q05639 463 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF415Q09FC8 603 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 EXOSC2Q13868 293 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TGFBIQ15582 683 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SNCBQ16143 134 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 UGT3A2Q3SY77 523 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 HSP90AA4PQ58FG1 418 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CT45A2Q5DJT8 189 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SLC25A53Q5H9E4 307 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 LIPNQ5VXI9 398 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 HIST2H2AA3Q6FI13 130 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 C11orf63Q6NUN7 778 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TTC27Q6P3X3 843 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM71Q6P5X7 295 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SHC4Q6S5L8 630 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SLC24A5Q71RS6 500 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 VPS36Q86VN1 386 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 C1orf52Q8N6N3 182 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SYT14Q8NB59 555 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 OR4L1Q8NH43 312 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms