RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 RGS1Q08116 209 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 KLHL22Q53GT1 634 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 GARNL3Q5VVW2 1013 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 PRAMEF9Q5VWM5 478 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 KIAA1161Q6NSJ0 714 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 CRTC1Q6UUV9 634 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 NEIL3Q8TAT5 605 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 ECHDC3Q96DC8 303 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 FAM120CQ9NX05 1096 aaKnown RBP13.14□□□□□ -0.31
SDC1-202ENST00000381150 HCN2Q9UL51 889 aa13.14□□□□□ -0.31
SDC1-202ENST00000381150 NUMA1Q14980 2115 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 ETHE1O95571 254 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 GLULP15104 373 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 NUDT1P36639 197 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 PER3P56645 1201 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 PIN1Q13526 163 aaPredicted RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 SLC5A12Q1EHB4 618 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 ARSKQ6UWY0 536 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 TPGS1Q6ZTW0 290 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 C9orf62Q8N4C0 152 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 RNFT2Q96EX2 444 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 C12orf66Q96MD2 445 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 HTATIP2Q9BUP3 242 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 GTPBP2Q9BX10 602 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 TAPBPLQ9BX59 468 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 SORBS1Q9BX66 1292 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 B3GNT4Q9C0J1 378 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 MS4A7Q9GZW8 240 aaPredicted RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 SEMA3GQ9NS98 782 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 CNOT2Q9NZN8 540 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 MRPL15Q9P015 296 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 PTPRSQ13332 1948 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 IQCMA0A1B0GVH7 501 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 DHFRP00374 187 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 PROS1P07225 676 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 ITGB8P26012 769 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 CCR7P32248 378 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 TALDO1P37837 337 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 CD79BP40259 229 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 RHAGQ02094 409 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 CRYZQ08257 329 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 ZNF791Q3KP31 576 aaPredicted RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 GPR33Q49SQ1 333 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 C1orf53Q5VUE5 145 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 LILRA6Q6PI73 481 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 SERPINA13PQ6UXR4 307 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 KANSL1Q7Z3B3 1105 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 NXPE1Q8N323 547 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 ZNF655Q8N720 491 aaPredicted RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 OR2AP1Q8NGE2 309 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 GEMIN6Q8WXD5 167 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 POP5Q969H6 163 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 PTGFRNQ9P2B2 879 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 EXO1Q9UQ84 846 aaKnown RBP13.13□□□□□ -0.31
SDC1-202ENST00000381150 CNTRLQ7Z7A1 2325 aa13.13□□□□□ -0.31
SDC1-202ENST00000381150 PRKYO43930 277 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 MPZL2O60487 215 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 GJA1P17302 382 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 LAG3P18627 525 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 CXCL3P19876 107 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 MAPK8P45983 427 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 STK19P49842 368 aaPredicted RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 B4GALNT1Q00973 533 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 FABP5Q01469 135 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 PTSQ03393 145 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 MAP4K2Q12851 820 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 ZXDCQ2QGD7 858 aaPredicted RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 RNF165Q6ZSG1 346 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 RASSF6Q6ZTQ3 369 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 KIF18BQ86Y91 864 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 CHCHD4Q8N4Q1 142 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 UFD1Q92890 307 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SCRN2Q96FV2 425 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 RNF208Q9H0X6 261 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 OR51B5Q9H339 312 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 MBD1Q9UIS9 605 aaPredicted RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 ABHD14A-ACY1A0A1B0GW23 586 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SH3D21A4FU49 640 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 HRO43593 1189 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 NME6O75414 186 aaPredicted RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 SEMG1P04279 462 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 LINC00271P0C7V0 271 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 CCL5P13501 91 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 PTGER1P34995 402 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SPAM1P38567 509 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SLC16A1P53985 500 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 EPHA5P54756 1037 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 TNK1Q13470 666 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 EXOSC2Q13868 293 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 GINS1Q14691 196 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 ANGPT1Q15389 498 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 LYPLAL1Q5VWZ2 237 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 TMEM65Q6PI78 240 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 TMPRSS11BQ86T26 416 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 UBTD2Q8WUN7 234 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 TBC1D20Q96BZ9 403 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SLC46A2Q9BY10 475 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 LSM7Q9UK45 103 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 ZFR2Q9UPR6 939 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 RUVBL1Q9Y265 456 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms