RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CRISP3P54108 245 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 C21orf59P57076 290 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PRAMEF8Q5VWM4 474 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PRAMEF7Q5VXH5 474 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 TCTN3Q6NUS6 607 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 OR8K5Q8NH50 307 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 MIPOL1Q8TD10 442 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 COL21A1Q96P44 957 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 ITPAQ9BY32 194 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 GIMAP4Q9NUV9 329 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 SPHK1Q9NYA1 384 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 FTSJ1Q9UET6 329 aa20.32■□□□□ 0.84
TRIM54-202ENST00000380075 PLXND1Q9Y4D7 1925 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 KMT2EQ8IZD2 1858 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 A0A1W2PR48 441 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 H1F0P07305 194 aaKnown RBP20.31■□□□□ 0.84
TRIM54-202ENST00000380075 CHRM5P08912 532 aaPredicted RBP20.31■□□□□ 0.84
TRIM54-202ENST00000380075 NR2F1P10589 423 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 FNTBP49356 437 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 BMXP51813 675 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 CRISP1P54107 249 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 PTGES3Q15185 160 aaKnown RBP20.31■□□□□ 0.84
TRIM54-202ENST00000380075 DCST1Q5T197 706 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 KLHL17Q6TDP4 642 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 CCDC103Q8IW40 242 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 LCN9Q8WX39 176 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 RLN3Q8WXF3 142 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 GTPBP3Q969Y2 492 aaKnown RBP20.31■□□□□ 0.84
TRIM54-202ENST00000380075 WDR92Q96MX6 357 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 BTBD2Q9BX70 525 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 DSPPQ9NZW4 1301 aa20.31■□□□□ 0.84
TRIM54-202ENST00000380075 ISM1B1AKI9 464 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 AXIN1O15169 862 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 GASTP01350 101 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 ACADMP11310 421 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 RPS15AP62244 130 aaKnown RBP20.3■□□□□ 0.84
TRIM54-202ENST00000380075 OCA2Q04671 838 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 FRMPD2BQ6IN97 320 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SLC48A1Q6P1K1 146 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 TRIM69Q86WT6 500 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 FRMD1Q8N878 549 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 XAGE5Q8WWM1 108 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 GGHQ92820 318 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 UCN3Q969E3 161 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 TBC1D29Q9UFV1 150 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 KLF15Q9UIH9 416 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 ATG4BQ9Y4P1 393 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 HEATR5BQ9P2D3 2071 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 POM121BA6NF01 834 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 M0R3G1 203 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 TNFRSF10CO14798 259 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 MAN1A2O60476 641 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 FOXD2O60548 495 aaPredicted RBP20.3■□□□□ 0.84
TRIM54-202ENST00000380075 AIFM1O95831 613 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 FHP07954 510 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 CSNK2A2P19784 350 aaPredicted RBP20.3■□□□□ 0.84
TRIM54-202ENST00000380075 CTSKP43235 329 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SERPINB10P48595 397 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 GSSP48637 474 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 TPMTP51580 245 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 NUBP1P53384 320 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 DGCR6Q14129 220 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 CEBPEQ15744 281 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SYPL1Q16563 259 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 ENPP7Q6UWV6 458 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SZRD1Q7Z422 152 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 PAQR7Q86WK9 346 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 FAM20CQ8IXL6 584 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 LINC00471Q8N535 108 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 OR1E3Q8WZA6 343 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SLC38A4Q969I6 547 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 GAL3ST3Q96A11 431 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 VMP1Q96GC9 406 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 UCK2Q9BZX2 261 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 CNOT2Q9NZN8 540 aaKnown RBP20.3■□□□□ 0.84
TRIM54-202ENST00000380075 TRPC4Q9UBN4 977 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 CES1P1Q9UKY3 287 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 SLC9A8Q9Y2E8 581 aa20.3■□□□□ 0.84
TRIM54-202ENST00000380075 C4orf51C9J302 202 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 ERAL1O75616 437 aaKnown RBP20.29■□□□□ 0.84
TRIM54-202ENST00000380075 SP9P0CG40 484 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 OSMP13725 252 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 F3P13726 295 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 CHMP24386 653 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 ELAVL4P26378 380 aaKnown RBP20.29■□□□□ 0.84
TRIM54-202ENST00000380075 PRR5P85299 388 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 DGUOKQ16854 277 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 C9orf43Q8TAL5 461 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-202ENST00000380075 SUN3Q8TAQ9 357 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 RHCGQ9UBD6 479 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 ZNF318Q5VUA4 2279 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 MYO15AQ9UKN7 3530 aa20.29■□□□□ 0.84
TRIM54-202ENST00000380075 TRBV4-1A0A0J9YWV2 114 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 PRAMEF27A3QJZ7 478 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 POU2F1P14859 743 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 MPIP34949 423 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 RGS1Q08116 209 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 FAM160A2Q8N612 972 aaPredicted RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 B4GALNT2Q8NHY0 566 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 NT5CQ8TCD5 201 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms