RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SH3BP4Q9P0V3 963 aa12.44□□□□□ -0.42
SQSTM1-201ENST00000360718 ABCG2Q9UNQ0 655 aa12.44□□□□□ -0.42
SQSTM1-201ENST00000360718 CORO2BQ9UQ03 480 aa12.44□□□□□ -0.42
SQSTM1-201ENST00000360718 PCDHGA10Q9Y5H3 936 aa12.44□□□□□ -0.42
SQSTM1-201ENST00000360718 RNF215Q9Y6U7 377 aa12.44□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF318Q5VUA4 2279 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 A0A1B0GTQ1 180 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 DPM1O60762 260 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 NR4A1P22736 598 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 PPIBP23284 216 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 EPHA8P29322 1005 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 FMO3P31513 532 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 CLK3P49761 638 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 LRRC74AQ0VAA2 488 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ADPRMQ3LIE5 342 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ANXA8L1Q5VT79 327 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 CBLL1Q75N03 491 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 PIWIL3Q7Z3Z3 882 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 VN1R4Q7Z5H5 301 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 UBE3DQ7Z6J8 389 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ADCK1Q86TW2 530 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ZZZ3Q8IYH5 903 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ATG16L2Q8NAA4 619 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF540Q8NDQ6 660 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 OR10Q1Q8NGQ4 319 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ITPKCQ96DU7 683 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 YIPF6Q96EC8 236 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 AHCYL2Q96HN2 611 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 DUSP23Q9BVJ7 150 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 ABCG4Q9H172 646 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 KLHL31Q9H511 634 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 DDX31Q9H8H2 851 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 CAPN10Q9HC96 672 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 KRT84Q9NSB2 600 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 GIN1Q9NXP7 522 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 LRIT1Q9P2V4 623 aa12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 NDRG4Q9ULP0 352 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 SAMHD1Q9Y3Z3 626 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-201ENST00000360718 A0A0G2JN53 185 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 GABRR3A8MPY1 467 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 HCRTR1O43613 425 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 NUDT21O43809 227 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 FAM20BO75063 409 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 ACVR2AP27037 513 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 TSFMP43897 325 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 TRA2BP62995 288 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 HEPACAMQ14CZ8 416 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 FAM71E1Q6IPT2 247 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CAMKMTQ7Z624 323 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 AMER3Q8N944 861 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 NT5CQ8TCD5 201 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 PPCDCQ96CD2 204 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC6A16Q9GZN6 736 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 ATP6V1HQ9UI12 483 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 DAPK2Q9UIK4 370 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 EXO1Q9UQ84 846 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 SCN2AQ99250 2005 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CACNA1HO95180 2353 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 BOLA2-SMG1P6H3BVE0 249 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 GUCY1B2O75343 617 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CPSF4O95639 269 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 SEMG1P04279 462 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 IL3P08700 152 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 FURINP09958 794 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 LAMP1P11279 417 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CYP4B1P13584 511 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 GLB1P16278 677 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 ALDH4A1P30038 563 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CBX3Q13185 183 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 PROX2Q3B8N5 592 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 NKAIN2Q5VXU1 208 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 PRSS48Q7RTY5 328 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 SAP25Q8TEE9 199 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 GAL3ST3Q96A11 431 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 COQ8BQ96D53 544 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 OR2A5Q96R48 311 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 CCDC3Q9BQI4 270 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 MROQ9BYG7 248 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 NLNQ9BYT8 704 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 BHLHE41Q9C0J9 482 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 ANKHQ9HCJ1 492 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 AKIP1Q9NQ31 210 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 C1GALT1Q9NS00 363 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 ADPRHL2Q9NX46 363 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 NLGN3Q9NZ94 848 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 PILRAQ9UKJ1 303 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 BTBD3Q9Y2F9 522 aa12.42□□□□□ -0.42
SQSTM1-201ENST00000360718 hCG_2039718K7EN88 272 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 NADKO95544 446 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 C9P02748 559 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ALOX5P09917 674 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ST6GAL1P15907 406 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 PSMB9P28065 219 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 IDUAP35475 653 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ITGA1P56199 1179 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC9A5Q14940 896 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 MAD2L1BPQ15013 274 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 FRMPD2BQ6IN97 320 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ABHD17CQ6PCB6 329 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms