RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 NANOGQ9H9S0 305 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SLC39A1Q9NY26 324 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 NENFQ9UMX5 172 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TRBV2A0A0J9YWF9 115 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 H3BSA7 217 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 EEF1E1O43324 174 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 CREBL2O60519 120 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 PEX14O75381 377 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ZNF14P17017 642 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 CBLP22681 906 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ALDH3B2P48448 385 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ZNF81P51508 661 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TAS2R38P59533 333 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 PRPS1P60891 318 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAB5BP61020 215 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ERVK-16P61578 105 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 ACY1Q03154 408 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 LRP8Q14114 963 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RABL3Q5HYI8 236 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 TMEM173Q86WV6 379 aaPredicted RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 PQLC3Q8N755 202 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RCBTB1Q8NDN9 531 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 S100PBPQ96BU1 408 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RAB39BQ96DA2 213 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SECISBP2Q96T21 854 aaKnown RBP6.18□□□□□ -1.42
UPF2-201ENST00000356352 SPIN2AQ99865 258 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 SPIN2BQ9BPZ2 258 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 RNF39Q9H2S5 420 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 KCNK13Q9HB14 408 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 CACNG4Q9UBN1 327 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 NAALAD2Q9Y3Q0 740 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 HSPB11Q9Y547 144 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 KCTD3Q9Y597 815 aa6.18□□□□□ -1.42
UPF2-201ENST00000356352 PARP4Q9UKK3 1724 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 TRAV6A0A075B6T7 132 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 hCG_1807616A0A1W2PRN6 198 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PCDH17O14917 1159 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TGM5O43548 720 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 MRPS14O60783 128 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 JRKO75564 520 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 GBAP04062 536 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 DDCP20711 480 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 UQCRC1P31930 480 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 DAP3P51398 398 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 SERTAD2Q14140 314 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 FGL2Q14314 439 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TECRLQ5HYJ1 363 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 HMBOX1Q6NT76 420 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TMEM107Q6UX40 140 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 LANCL3Q6ZV70 420 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 KIAA0907Q7Z7F0 614 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR4K1Q8NGD4 311 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR5H2Q8NGV7 314 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CHFRQ96EP1 664 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 FBXL20Q96IG2 436 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ZNF317Q96PQ6 595 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 KCNA7Q96RP8 456 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SERINC2Q96SA4 455 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 NELL2Q99435 816 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PITX2Q99697 317 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TMEM185BQ9H7F4 350 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR1A2Q9Y585 309 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 S1PR4O95977 384 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ADAP00813 363 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ALDOAP04075 364 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 CYCSP99999 105 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 CRYZQ08257 329 aaKnown RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 SLC22A10Q63ZE4 541 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 RTL6Q6ICC9 239 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 Q6ZVL8 140 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TRIM46Q7Z4K8 759 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TRAPPC6BQ86SZ2 158 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 BEST3Q8N1M1 668 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 DEFB119Q8N690 84 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 METTL27Q8N6F8 245 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 OR8K3Q8NH51 312 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SLC7A13Q8TCU3 470 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ASB12Q8WXK4 309 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CDCA3Q99618 268 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 CDC6Q99741 560 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PITHD1Q9GZP4 211 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 FOLH1BQ9HBA9 442 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 IL23AQ9NPF7 189 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ACOT13Q9NPJ3 140 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 NANSQ9NR45 359 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CCM2LQ9NUG4 571 aaPredicted RBP6.17□□□□□ -1.42
UPF2-201ENST00000356352 AIG1Q9NVV5 245 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 EMC3Q9P0I2 261 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SPEF2Q9C093 1822 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 C17orf113A0A1B0GUU1 675 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 A0A1W2PQU0 124 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 GLOD5A6NK44 160 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 FZD9O00144 591 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 ADAMTS4O75173 837 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 DIRAS1O95057 198 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 PNMTP11086 282 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CREB1P16220 341 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 SYN1P17600 705 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 CELP19835 753 aa6.17□□□□□ -1.42
UPF2-201ENST00000356352 TNFSF4P23510 183 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms