RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ADIPOR1Q96A54 375 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 KLHL29Q96CT2 875 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 CNRIP1Q96F85 164 aaPredicted RBP16.94■□□□□ 0.3
CLN3-202ENST00000355477 ZDHHC11Q9H8X9 412 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 PROK2Q9HC23 129 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 DLGAP4Q9Y2H0 992 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 DCHS2Q6V1P9 2916 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 SERTM1A2A2V5 107 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 ATP1B1P05026 303 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 IL3P08700 152 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 CSNK2A2P19784 350 aaPredicted RBP16.93■□□□□ 0.3
CLN3-202ENST00000355477 MAP4K2Q12851 820 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 DUSP8Q13202 625 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 SPIN4Q56A73 249 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 GK5Q6ZS86 529 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 TMEM251Q8N6I4 163 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 CCDC63Q8NA47 563 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 FAM13CQ8NE31 585 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 OR5M3Q8NGP4 307 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 RDH11Q8TC12 318 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 AENQ8WTP8 325 aaKnown RBP16.93■□□□□ 0.3
CLN3-202ENST00000355477 TP53INP1Q96A56 240 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 FAIM2Q9BWQ8 316 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 SHCBP1LQ9BZQ2 653 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 IL1RL2Q9HB29 575 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 MAT2BQ9NZL9 334 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-202ENST00000355477 ZNF639Q9UID6 485 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 UTS2RQ9UKP6 389 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 PSME2Q9UL46 239 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 DTX4Q9Y2E6 619 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 CHCHD2Q9Y6H1 151 aaPredicted RBP16.93■□□□□ 0.3
CLN3-202ENST00000355477 V9GYY5 206 aaPredicted RBP16.93■□□□□ 0.3
CLN3-202ENST00000355477 APCP25054 2843 aa16.93■□□□□ 0.3
CLN3-202ENST00000355477 GNG14A0A1W2PPG7 69 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 CCDC151A5D8V7 595 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 GOLGA6L10A6NI86 522 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 PRRG2O14669 202 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 LRATO95237 230 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 NUDT17P0C025 328 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 GRNP28799 593 aaKnown RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 MAGEA5P43359 124 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 ACSM2AQ08AH3 577 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 EXOSC7Q15024 291 aaKnown RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 CDSNQ15517 529 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 LTB4RQ15722 352 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 NTRK2Q16620 822 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 HYAL4Q2M3T9 481 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 CFAP157Q5JU67 520 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 PRAMEF20Q5VT98 475 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 ACSM2BQ68CK6 577 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 SP5Q6BEB4 398 aaPredicted RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 GALNT18Q6P9A2 607 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 RPTNQ6XPR3 784 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 RGS9BPQ6ZS82 235 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 SLC22A16Q86VW1 577 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 C10orf107Q8IVU9 208 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 VWA5B2Q8N398 1253 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 ZNF808Q8N4W9 903 aaPredicted RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 OR7G1Q8NGA0 311 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 FAM57AQ8TBR7 257 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 C16orf78Q8WTQ4 265 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 CTHRC1Q96CG8 243 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 EBPLQ9BY08 206 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 BRINP2Q9C0B6 783 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 CNOT11Q9UKZ1 510 aaKnown RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 PLLPQ9Y342 182 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 LIPGQ9Y5X9 500 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 ZNF780BQ9Y6R6 833 aa16.92■□□□□ 0.3
CLN3-202ENST00000355477 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.92■□□□□ 0.3
CLN3-202ENST00000355477 PRSS44E7EML9 344 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 ACOT7O00154 380 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 TPOP07202 933 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 CELA3AP09093 270 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 DRD2P14416 443 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 GPX3P22352 226 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 TIA1P31483 386 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLN3-202ENST00000355477 FBXW4P57775 412 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 NAA20P61599 178 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 ART3Q13508 389 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 PCLAFQ15004 111 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 TRMT12Q53H54 448 aaKnown RBP16.91■□□□□ 0.3
CLN3-202ENST00000355477 SPDYAQ5MJ70 313 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 C6orf163Q5TEZ5 329 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 LIPMQ5VYY2 423 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 HLA-DQA1Q5Y7H0 255 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 ARHGAP11AQ6P4F7 1023 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 TRABD2AQ86V40 505 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 CD163Q86VB7 1156 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 CCDC116Q8IYX3 515 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 DND1Q8IYX4 353 aaKnown RBP16.91■□□□□ 0.3
CLN3-202ENST00000355477 PRR22Q8IZ63 422 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 TAGAPQ8N103 731 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 FBXW8Q8N3Y1 598 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 BANPQ8N9N5 519 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 DMRTA2Q96SC8 542 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 NXF5Q9H1B4 397 aaKnown RBP16.91■□□□□ 0.3
CLN3-202ENST00000355477 SIRT5Q9NXA8 310 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 CNIH4Q9P003 139 aa16.91■□□□□ 0.3
CLN3-202ENST00000355477 NPFFR2Q9Y5X5 522 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms