RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C8BP07358 591 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 PRR23D2P0DMB1 279 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 C1GALT1C1LP0DN25 315 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 CHMP24386 653 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 FAM98BQ52LJ0 330 aaKnown RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 AGKQ53H12 422 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 GCNT6Q5T4J0 391 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 KLHDC8AQ8IYD2 350 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 FBXW8Q8N3Y1 598 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 VANGL1Q8TAA9 524 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-203ENST00000341423 HRASLS5Q96KN8 279 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 FUCA2Q9BTY2 467 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 FAM118AQ9NWS6 357 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SLC24A2Q9UI40 661 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 SCOCQ9UIL1 159 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 TCFL5Q9UL49 500 aa7.95□□□□□ -1.14
HMGB1-203ENST00000341423 MED19A0JLT2 244 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 C16orf97H3BN30 126 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 EPHB6O15197 1021 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TGFB1I1O43294 461 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 EIF1BO60739 113 aaKnown RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 LCA5LO95447 670 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 IL6P05231 212 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 LIMK1P53667 647 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 GBE1Q04446 702 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 GALNT1Q10472 559 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TBC1D28Q2M2D7 210 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 FRMPD2BQ6IN97 320 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PXKQ7Z7A4 578 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 MISPQ8IVT2 679 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TFAP2BQ92481 460 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 GAL3ST3Q96A11 431 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TP53INP1Q96A56 240 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CMTM5Q96DZ9 223 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PERPQ96FX8 193 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SLC45A3Q96JT2 553 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PRDM9Q9NQV7 894 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 VPS29Q9UBQ0 182 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CDC42EP3Q9UKI2 254 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 FBXL3Q9UKT7 428 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PRPF19Q9UMS4 504 aaKnown RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 KCNMB2Q9Y691 235 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 MAP2P11137 1827 aaKnown RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SLX4Q8IY92 1834 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 FAM237BA0A1B0GVD1 139 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 H0YGG7 62 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 KLHL2O95198 593 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ANGPTL1O95841 491 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ARF3P61204 181 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CHI3L2Q15782 390 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 NPTX1Q15818 432 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ZSWIM7Q19AV6 140 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 C1QL3Q5VWW1 255 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 LDB1Q86U70 411 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TCEANCQ8N8B7 351 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 BHLHE22Q8NFJ8 381 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 OR52E4Q8NGH9 312 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 OR2L2Q8NH16 312 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 OR5P2Q8WZ92 322 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 OR52E6Q96RD3 313 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 NPY6RQ99463 290 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 DNTTIP1Q9H147 329 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 IL37Q9NZH6 218 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CNIH4Q9P003 139 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CMAHPQ9Y471 501 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 A0A1W2PQ72 361 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SAC3D1A6NKF1 404 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TGDSO95455 350 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 MPC1LP0DKB6 136 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 HOXD8P13378 290 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CAPN3P20807 821 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 DCKP27707 260 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PDLIM4P50479 330 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PMPCAQ10713 525 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ARHGAP19Q14CB8 494 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SEC23BQ15437 767 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TMEM176BQ3YBM2 270 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SIRPB2Q5JXA9 342 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SLX4IPQ5VYV7 408 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 TMPRSS7Q7RTY8 843 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PRR22Q8IZ63 422 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 RIBC1Q8N443 379 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 OR2L5Q8NG80 312 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CMTM3Q96MX0 182 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 RHOJQ9H4E5 214 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ANKZF1Q9H8Y5 726 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CD248Q9HCU0 757 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 GPR6P46095 362 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CSNK1DP48730 415 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 PKNOX1P55347 436 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 FAM189A2Q15884 450 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 BEX5Q5H9J7 111 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CRELD2Q6UXH1 353 aaPredicted RBP7.94□□□□□ -1.14
HMGB1-203ENST00000341423 CNTD1Q8N815 330 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 ULBP2Q9BZM5 246 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 REEP1Q9H902 201 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 NHSQ6T4R5 1651 aa7.94□□□□□ -1.14
HMGB1-203ENST00000341423 A0A1B0GVI7 797 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SEMA5AQ13591 1074 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms