RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KCNJ9Q92806 393 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 UTP4Q969X6 686 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 TRAPPC4Q9Y296 219 aa7.33□□□□□ -1.24
LIMCH1-201ENST00000313860 LGALS16A8MUM7 142 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RBBP9O75884 186 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ATG12O94817 140 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CDS2O95674 445 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CD80P33681 288 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CLCNKAP51800 687 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 WDR72Q3MJ13 1102 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CYB5R2Q6BCY4 276 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 GPR153Q6NV75 609 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PAMR1Q6UXH9 720 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RAVER1Q8IY67 606 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 NRSN1Q8IZ57 195 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SYNE4Q8N205 404 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SAMD12Q8N8I0 201 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR9K2Q8NGE7 335 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 STT3BQ8TCJ2 826 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 APH1AQ96BI3 265 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR8B4Q96RC9 309 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 AMNQ9BXJ7 453 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC38A7Q9NVC3 462 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ZDHHC3Q9NYG2 299 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ABI3Q9P2A4 366 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 POU2F3Q9UKI9 436 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 INTS6Q9UL03 887 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PFASO15067 1338 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RGS12O14924 1447 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A0U1RQJ8 604 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RAB27BO00194 218 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC16A7O60669 478 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CKMP06732 381 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 GIPP09681 153 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TAL1P17542 331 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR1D4P47884 311 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 DGKEP52429 567 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 BAXQ07812 192 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC39A14Q15043 492 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC35G1Q2M3R5 365 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC35E4Q6ICL7 350 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RPL13AP3Q6NVV1 102 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MAL2Q969L2 176 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 RTP4Q96DX8 246 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 C3orf30Q96M34 536 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 COL25A1Q9BXS0 654 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 VAPAQ9P0L0 249 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ZHX2Q9Y6X8 837 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MANBAO00462 879 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LIPCP11150 499 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FCER1AP12319 257 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 POLR2CP19387 275 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FGF7P21781 194 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 HCCSP53701 268 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MZT1Q08AG7 82 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 COL9A2Q14055 689 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FAHD2BQ6P2I3 314 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ALYREFQ86V81 257 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM151BQ8IW70 566 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM199Q8N511 208 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 NKAPQ8N5F7 415 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM24BQ8N5W8 94 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR8G5Q8NG78 346 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TOMM40LQ969M1 308 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CXorf40BQ96DE9 158 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TRMT2BQ96GJ1 504 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRC3BQ96PB8 259 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PTTG2Q9NZH5 202 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR12D3Q9UGF7 316 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TSPAN16Q9UKR8 245 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SARDHQ9UL12 918 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PCDHB3Q9Y5E6 796 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A0B4J203 849 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 M0QYT0 321 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ARNTP27540 789 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SSTR1P30872 391 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MMP13P45452 471 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 IRF5Q13568 498 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 DPYSL3Q14195 570 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 GRM4Q14833 912 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LASP1Q14847 261 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PDLIM3Q53GG5 364 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LIPMQ5VYY2 423 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LAIR1Q6GTX8 287 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FBXW12Q6X9E4 464 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 KCNMB4Q86W47 210 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MISPQ8IVT2 679 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 APH1BQ8WW43 257 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 MMABQ96EY8 250 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 WWTR1Q9GZV5 400 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 XYLT2Q9H1B5 865 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 IFT22Q9H7X7 185 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 BCO1Q9HAY6 547 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 STAP2Q9UGK3 403 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 DBX1A6NMT0 343 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM155AB1AL88 458 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 FFAR2O15552 330 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SEC14L2O76054 403 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 HOXA10P31260 410 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2B8PP59922 312 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms