RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RAB10P61026 200 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 FASTKD3Q14CZ7 662 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 SETDB1Q15047 1291 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 ZKSCAN8Q15776 578 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 LIPJQ5W064 366 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 TIGD3Q6B0B8 471 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 MRM1Q6IN84 353 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 CYS1Q717R9 158 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 PYROXD1Q8WU10 500 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 EXT2Q93063 718 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 DTNBP1Q96EV8 351 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 WDYHV1Q96HA8 205 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 GNRHR2Q96P88 292 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 RBBP8Q99708 897 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 RBM24Q9BX46 236 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 SORBS1Q9BX66 1292 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 ALG9Q9H6U8 611 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 DDX31Q9H8H2 851 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 CXorf21Q9HAI6 301 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 NMRAL1Q9HBL8 299 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 TEX10Q9NXF1 929 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 PSD3Q9NYI0 1048 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 NDRG3Q9UGV2 375 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 EIF3LQ9Y262 564 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 SLC6A5Q9Y345 797 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 ASB4Q9Y574 426 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 COL6A5A8TX70 2615 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 EXPH5Q8NEV8 1989 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 KIAA1549Q9HCM3 1950 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 CCDC189A1A4V9 331 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SH3D21A4FU49 640 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SYCE1LA8MT33 242 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SUPT3HB4E1H0 165 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 CASKO14936 926 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 TP73O15350 636 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 UGDHO60701 494 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 KERAO60938 352 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SUPT3HO75486 399 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 CPN1P15169 458 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 NAGAP17050 411 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 PIK3R1P27986 724 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SPRP35270 261 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 GP5P40197 560 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 CPA2P48052 419 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 DIO3P55073 304 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 CUL3Q13618 768 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 FNDC7Q5VTL7 733 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 OR52E8Q6IFG1 317 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 TMEM81Q6P7N7 255 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 TBC1D1Q86TI0 1168 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 MYLK4Q86YV6 388 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 GALNT12Q8IXK2 581 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 KLHL7Q8IXQ5 586 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 OR7G1Q8NGA0 311 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 OR1J4Q8NGS1 313 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 MTERF1Q99551 399 aaKnown RBP13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 PIGMQ9H3S5 423 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 METTL7AQ9H8H3 244 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 ZNF395Q9H8N7 513 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 SMYD2Q9NRG4 433 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 ANGPTL3Q9Y5C1 460 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 MED12Q93074 2177 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 ATRQ13535 2644 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 ZANQ9Y493 2812 aa13.49□□□□□ -0.25
CCDC88B-201ENST00000301897 A0A0A6YYD5 115 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 A0A1W2PR48 441 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 EFCAB8A8MWE9 144 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 H0YIV9 168 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 ZSCAN12O43309 604 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 PRKRAO75569 313 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 CLPSP04118 112 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 RHOXF2BP0C7M4 288 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 SSTR4P31391 388 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 RPS13P62277 151 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 FUT7Q11130 342 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 SNTA1Q13424 505 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 GAB1Q13480 694 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 EIPR1Q53HC9 387 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 BICRALQ6AI39 1079 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 ENPP6Q6UWR7 440 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 TMEM64Q6YI46 380 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 Q71RC1 249 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 CCDC91Q7Z6B0 441 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 LRRC75A-AS1Q8N1F1 130 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 FAM83FQ8NEG4 500 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 PIGTQ969N2 578 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 ARSGQ96EG1 525 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 UCN2Q96RP3 112 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 PIP5K1AQ99755 562 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 SMR3AQ99954 134 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 ACTR8Q9H981 624 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 CFL2Q9Y281 166 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 MED12LQ86YW9 2145 aa13.48□□□□□ -0.25
CCDC88B-201ENST00000301897 GLOD5A6NK44 160 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 CCDC188H7C350 402 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 FOXE1O00358 373 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 EIF3HO15372 352 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 EEDO75530 441 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 RCBTB2O95199 551 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 AIFM1O95831 613 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms