RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 CYB561P49447 251 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 HLCSP50747 726 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 SSR4P51571 173 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 OCRLQ01968 901 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 PTGR1Q14914 329 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 CEBPEQ15744 281 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 IL23RQ5VWK5 629 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 SLC29A4Q7RTT9 530 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 TRIM42Q8IWZ5 723 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 VWA5B2Q8N398 1253 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 OR5L2Q8NGL0 311 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 NUBPLQ8TB37 319 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 RAB3IL1Q8TBN0 382 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 NUDT8Q8WV74 236 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 ZNF75CPQ92670 426 aaPredicted RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 KAT2AQ92830 837 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 MIB2Q96AX9 1013 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 CTHRC1Q96CG8 243 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 TAAR6Q96RI8 345 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 WWTR1Q9GZV5 400 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 OR10A5Q9H207 317 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 AKTIPQ9H8T0 292 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS28-201ENST00000292510 DTX4Q9Y2E6 619 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 WBP11Q9Y2W2 641 aaKnown RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 RP1L1Q8IWN7 2480 aaPredicted RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 TENM4Q6N022 2769 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 MYO1GB0I1T2 1018 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 J3QKU1 62 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 SLC25A12O75746 678 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 NADKO95544 446 aaPredicted RBP12.37□□□□□ -0.43
VPS28-201ENST00000292510 MAPK1P28482 360 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 NCBP2P52298 156 aaKnown RBP eCLIP12.37□□□□□ -0.435e-6■■□□□ 11.5
VPS28-201ENST00000292510 PPP2R2AP63151 447 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 FOXK1P85037 733 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 PMP22Q01453 160 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 MAP4K2Q12851 820 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 MPEG1Q2M385 716 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 ZNF628Q5EBL2 1059 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 PIGGQ5H8A4 983 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 SLC25A25Q6KCM7 469 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 IL20RBQ6UXL0 311 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 GALNTL5Q7Z4T8 443 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 MDGA2Q7Z553 956 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 CYP4Z2PQ8N1L4 340 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 OR52R1Q8NGF1 315 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 C16orf52Q8NHV5 167 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 ASB15Q8WXK1 588 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 CIDECQ96AQ7 238 aaPredicted RBP12.37□□□□□ -0.43
VPS28-201ENST00000292510 SCMH1Q96GD3 660 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 GLIPR2Q9H4G4 154 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 REEP4Q9H6H4 257 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 TRIM45Q9H8W5 580 aaPredicted RBP12.37□□□□□ -0.43
VPS28-201ENST00000292510 TAS2R7Q9NYW3 318 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 BCAP29Q9UHQ4 241 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 ZNF639Q9UID6 485 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 COPG1Q9Y678 874 aaKnown RBP12.37□□□□□ -0.43
VPS28-201ENST00000292510 CROCCQ5TZA2 2017 aa12.37□□□□□ -0.43
VPS28-201ENST00000292510 C2orf92A0A1B0GVN3 265 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 OR6C76A6NM76 312 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 A8MVJ9 347 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 KLF11O14901 512 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 SP1P08047 785 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 G6PDP11413 515 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 CD46P15529 392 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 EFNA1P20827 205 aaPredicted RBP12.36□□□□□ -0.43
VPS28-201ENST00000292510 NTSP30990 170 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 MPIP34949 423 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 ASMTP46597 345 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 NR0B1P51843 470 aaKnown RBP12.36□□□□□ -0.43
VPS28-201ENST00000292510 DIO3P55073 304 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 EMX2Q04743 252 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 MAPKAPK3Q16644 382 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 RPUSD3Q6P087 351 aaKnown RBP12.36□□□□□ -0.43
VPS28-201ENST00000292510 TMEM64Q6YI46 380 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 WDR75Q8IWA0 830 aaKnown RBP12.36□□□□□ -0.43
VPS28-201ENST00000292510 SAMD14Q8IZD0 417 aaPredicted RBP12.36□□□□□ -0.43
VPS28-201ENST00000292510 FAM9CQ8IZT9 166 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 KRTCAP2Q8N6L1 136 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 ZNF441Q8N8Z8 693 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 OR7G2Q8NG99 324 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 OR7G1Q8NGA0 311 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 OR7A2PQ8NGA2 310 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 ZNF675Q8TD23 568 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 GRHL3Q8TE85 626 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 PPCDCQ96CD2 204 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 C5orf34Q96MH7 638 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 MEAF6Q9HAF1 191 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 HPF1Q9NWY4 346 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 SH3BP4Q9P0V3 963 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 ERVK-11Q9UQG0 969 aa12.36□□□□□ -0.43
VPS28-201ENST00000292510 SHANK1Q9Y566 2161 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 UBR5O95071 2799 aaPredicted RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 GOLGA8QA0A0J9YX86 632 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 GOLGA8OA6NCC3 632 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 GOLGA8NF8WBI6 632 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 SDHDO14521 159 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 SCAMP2O15127 329 aaKnown RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 PDPK1O15530 556 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 NME2P1O60361 137 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms