RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 NAE1Q13564 534 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 HSDL1Q3SXM5 330 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 BEX5Q5H9J7 111 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 TSTD2Q5T7W7 516 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 IL23RQ5VWK5 629 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 NIPAL3Q6P499 406 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 BLOC1S2Q6QNY1 142 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 BTNL8Q6UX41 500 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 METTL7BQ6UX53 244 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 Q6ZPA2 131 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 Q7L0L9 218 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 BHLHA15Q7RTS1 189 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 C16orf62Q7Z3J2 963 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 MDGA2Q7Z553 956 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 CDKL3Q8IVW4 592 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 CCDC36Q8IYA8 594 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 ZNF683Q8IZ20 524 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 APCDD1Q8J025 514 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 CADM3Q8N126 398 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 FAM58AQ8N1B3 248 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 GALNT16Q8N428 558 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 PNPLA1Q8N8W4 532 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 CSNK2A3Q8NEV1 391 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 OR4C5Q8NGB2 326 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 KCNG3Q8TAE7 436 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 PHOSPHO2Q8TCD6 241 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 REPS1Q96D71 796 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 CHMP6Q96FZ7 201 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 PBKQ96KB5 322 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 TEFMQ96QE5 360 aaKnown RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 CCNL2Q96S94 520 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 ACOX2Q99424 681 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 SLC29A1Q99808 456 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 TSG101Q99816 390 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 CINPQ9BW66 212 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 LRRC2Q9BYS8 371 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 SHCBP1LQ9BZQ2 653 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 ROPN1BQ9BZX4 212 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 AMBRA1Q9C0C7 1298 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 WWP1Q9H0M0 922 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 DPEP3Q9H4B8 488 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 ZNF160Q9HCG1 818 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 DNAJC4Q9NNZ3 241 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 MRPL17Q9NRX2 175 aaKnown RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 GPR173Q9NS66 373 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 HIF1ANQ9NWT6 349 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 ANKRD10Q9NXR5 420 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 DPP3Q9NY33 737 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 COPS7AQ9UBW8 275 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 PISDQ9UG56 409 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 ERRFI1Q9UJM3 462 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 CA5BQ9Y2D0 317 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 RHBDD3Q9Y3P4 386 aa4.26□□□□□ -1.73
CD44-202ENST00000278385 SRPRBQ9Y5M8 271 aaKnown RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 KLF2Q9Y5W3 355 aaPredicted RBP4.26□□□□□ -1.73
CD44-202ENST00000278385 BRCA2P51587 3418 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 KLF18A0A0U1RQI7 1052 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 A0A1B0GUH1 482 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 SMCO2A6NFE2 343 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 HEPACAM2A8MVW5 462 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 PPIAL4DF5H284 164 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 PMPCBO75439 489 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ATP5HO75947 161 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 CNTN5O94779 1100 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 TOP3BO95985 862 aaKnown RBP4.25□□□□□ -1.73
CD44-202ENST00000278385 C1RP00736 705 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ERBB2P04626 1255 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 MCF2P10911 925 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 CREB1P16220 341 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ITGB6P18564 788 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 UBA1P22314 1058 aaKnown RBP4.25□□□□□ -1.73
CD44-202ENST00000278385 GNA11P29992 359 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 TRIM23P36406 574 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 METAP2P50579 478 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-202ENST00000278385 NAPAP54920 295 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 CDH4P55283 916 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 GSDMDP57764 484 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 SEC61GP60059 68 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 RAB11AP62491 216 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 MYBPC1Q00872 1141 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 SLC18A2Q05940 514 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ENPEPQ07075 957 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 FGL1Q08830 312 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 DMWDQ09019 674 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 HYAL1Q12794 435 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 DMP1Q13316 513 aaPredicted RBP4.25□□□□□ -1.73
CD44-202ENST00000278385 RCAN2Q14206 197 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 NR1D2Q14995 579 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 MAPRE2Q15555 327 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 RAB11BQ15907 218 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ACKR1Q16570 336 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 ALKBH6Q3KRA9 238 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 TBC1D25Q3MII6 688 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 XKR7Q5GH72 579 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 PPP6R3Q5H9R7 873 aaPredicted RBP4.25□□□□□ -1.73
CD44-202ENST00000278385 CTSL3PQ5NE16 218 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 TMEM53Q6P2H8 277 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 FBXO42Q6P3S6 717 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 TMEM220Q6QAJ8 160 aa4.25□□□□□ -1.73
CD44-202ENST00000278385 CD164L2Q6UWJ8 174 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms