RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 Q6ZRG5 221 aa2.54□□□□□ -2
CD44-239ENST00000639002 PRSS48Q7RTY5 328 aa2.54□□□□□ -2
CD44-239ENST00000639002 TGIF2LYQ8IUE0 185 aa2.54□□□□□ -2
CD44-239ENST00000639002 CORO2AQ92828 525 aa2.54□□□□□ -2
CD44-239ENST00000639002 ERO1AQ96HE7 468 aa2.54□□□□□ -2
CD44-239ENST00000639002 S1PR3Q99500 378 aa2.54□□□□□ -2
CD44-239ENST00000639002 SLC25A19Q9HC21 320 aa2.54□□□□□ -2
CD44-239ENST00000639002 MFSD2BA6NFX1 497 aa2.53□□□□□ -2
CD44-239ENST00000639002 CHUKO15111 745 aa2.53□□□□□ -2
CD44-239ENST00000639002 OAS1P00973 400 aaKnown RBP2.53□□□□□ -2
CD44-239ENST00000639002 MMP10P09238 476 aa2.53□□□□□ -2
CD44-239ENST00000639002 IDSP22304 550 aa2.53□□□□□ -2
CD44-239ENST00000639002 UCP1P25874 307 aa2.53□□□□□ -2
CD44-239ENST00000639002 MAGEB1P43366 347 aa2.53□□□□□ -2
CD44-239ENST00000639002 P2RY4P51582 365 aa2.53□□□□□ -2
CD44-239ENST00000639002 TKTL1P51854 596 aa2.53□□□□□ -2
CD44-239ENST00000639002 ZNF658BQ4V348 819 aaPredicted RBP2.53□□□□□ -2
CD44-239ENST00000639002 CAVIN1Q6NZI2 390 aaKnown RBP2.53□□□□□ -2
CD44-239ENST00000639002 TATDN1Q6P1N9 297 aa2.53□□□□□ -2
CD44-239ENST00000639002 MOB2Q70IA6 237 aa2.53□□□□□ -2
CD44-239ENST00000639002 OR8H2Q8N162 312 aa2.53□□□□□ -2
CD44-239ENST00000639002 NFAM1Q8NET5 270 aaPredicted RBP2.53□□□□□ -2
CD44-239ENST00000639002 SETD6Q8TBK2 473 aa2.53□□□□□ -2
CD44-239ENST00000639002 SETD7Q8WTS6 366 aaKnown RBP2.53□□□□□ -2
CD44-239ENST00000639002 SRD5A3Q9H8P0 318 aa2.53□□□□□ -2
CD44-239ENST00000639002 GDF3Q9NR23 364 aa2.53□□□□□ -2
CD44-239ENST00000639002 DNAJC11Q9NVH1 559 aa2.53□□□□□ -2
CD44-239ENST00000639002 IGLV8-61A0A075B6I0 122 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 SLC33A1O00400 549 aaPredicted RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 IFIT3O14879 490 aaKnown RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 TSPAN2O60636 221 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 PVRP15151 417 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 SOAT1P35610 550 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 TRIM23P36406 574 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 GP5P40197 560 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 ARHGDIBP52566 201 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 ARHGAP1Q07960 439 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 CD47Q08722 323 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 MS4A13Q5J8X5 152 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 MPP7Q5T2T1 576 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 ZNF658Q5TYW1 1059 aaPredicted RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 C1orf189Q5VU69 101 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 TAF3Q5VWG9 929 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 APOOLQ6UXV4 268 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 GLRX5Q86SX6 157 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 UNC5CLQ8IV45 518 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 GPR65Q8IYL9 337 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 C14orf178Q8N769 122 aaPredicted RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 FBXO25Q8TCJ0 367 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 BIRC7Q96CA5 298 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 PARK7Q99497 189 aaKnown RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 NMUR2Q9GZQ4 415 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 ZDHHC6Q9H6R6 413 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 APOBEC3BQ9UH17 382 aaKnown RBP2.52□□□□□ -2.01
CD44-239ENST00000639002 CIDEBQ9UHD4 219 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 NEU3Q9UQ49 428 aa2.52□□□□□ -2.01
CD44-239ENST00000639002 TRAV34A0A0B4J273 112 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 MEI4A8MW99 385 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 TCP11X1B4DZS4 312 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 SLC2A10O95528 541 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 XCR1P46094 333 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 SLC34A1Q06495 639 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 IL17AQ16552 155 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 SCARA5Q6ZMJ2 495 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 ASPGQ86U10 573 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 MKXQ8IYA7 352 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 KLHDC8AQ8IYD2 350 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 NHLRC2Q8NBF2 726 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 MIEF1Q9NQG6 463 aa2.51□□□□□ -2.01
CD44-239ENST00000639002 RPH3AQ9Y2J0 694 aaPredicted RBP2.51□□□□□ -2.01
CD44-239ENST00000639002 H7C0S8 307 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 EMC8O43402 210 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 FIBPO43427 364 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 DKC1O60832 514 aaKnown RBP eCLIP2.5□□□□□ -2.01
CD44-239ENST00000639002 SERF1AO75920 110 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 STBD1O95210 358 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 NUDT14O95848 222 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 HSP90AA1P07900 732 aaKnown RBP2.5□□□□□ -2.01
CD44-239ENST00000639002 GSTA2P09210 222 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 WNT2P09544 360 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 IFNAR1P17181 557 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ACP1P24666 158 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 NT5C2P49902 561 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ZNF131P52739 623 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 NUCB1Q02818 461 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ZNF33BQ06732 778 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 TFCP2Q12800 502 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 OVGP1Q12889 678 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 MSLNQ13421 630 aaPredicted RBP2.5□□□□□ -2.01
CD44-239ENST00000639002 HEPACAMQ14CZ8 416 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ACKR1Q16570 336 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 SBK1Q52WX2 424 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 NHSL2Q5HYW2 709 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ADAMTSL5Q6ZMM2 481 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 UBLCP1Q8WVY7 318 aaPredicted RBP2.5□□□□□ -2.01
CD44-239ENST00000639002 GGHQ92820 318 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 SERINC2Q96SA4 455 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 C19orf24Q9BVV8 132 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 TRIM9Q9C026 710 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 CCPG1Q9ULG6 757 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms