RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 NINQ8N4C6 2090 aa15.05■□□□□ -0
CLN3-255ENST00000637100 A0A1W2PR48 441 aa15.04■□□□□ -0
CLN3-255ENST00000637100 TCRBV9S1A1TA0A576 114 aa15.04■□□□□ -0
CLN3-255ENST00000637100 WASHC1A8K0Z3 465 aa15.04■□□□□ -0
CLN3-255ENST00000637100 EFCAB8A8MWE9 144 aa15.04■□□□□ -0
CLN3-255ENST00000637100 H0YIV9 168 aa15.04■□□□□ -0
CLN3-255ENST00000637100 SAP18O00422 153 aaKnown RBP15.04■□□□□ -0
CLN3-255ENST00000637100 KERAO60938 352 aa15.04■□□□□ -0
CLN3-255ENST00000637100 RAF1P04049 648 aa15.04■□□□□ -0
CLN3-255ENST00000637100 PTX3P26022 381 aaPredicted RBP15.04■□□□□ -0
CLN3-255ENST00000637100 BUD31P41223 144 aaPredicted RBP15.04■□□□□ -0
CLN3-255ENST00000637100 TRPC1P48995 793 aa15.04■□□□□ -0
CLN3-255ENST00000637100 ZNF267Q14586 743 aaPredicted RBP15.04■□□□□ -0
CLN3-255ENST00000637100 RPS6KA2Q15349 733 aa15.04■□□□□ -0
CLN3-255ENST00000637100 LIPJQ5W064 366 aa15.04■□□□□ -0
CLN3-255ENST00000637100 TMEM198Q66K66 360 aa15.04■□□□□ -0
CLN3-255ENST00000637100 TAGAPQ8N103 731 aa15.04■□□□□ -0
CLN3-255ENST00000637100 MMP21Q8N119 569 aa15.04■□□□□ -0
CLN3-255ENST00000637100 RNF175Q8N4F7 328 aa15.04■□□□□ -0
CLN3-255ENST00000637100 ZNF615Q8N8J6 731 aa15.04■□□□□ -0
CLN3-255ENST00000637100 FAM13CQ8NE31 585 aa15.04■□□□□ -0
CLN3-255ENST00000637100 CDKL2Q92772 493 aa15.04■□□□□ -0
CLN3-255ENST00000637100 RIT1Q92963 219 aa15.04■□□□□ -0
CLN3-255ENST00000637100 ADIPOR1Q96A54 375 aa15.04■□□□□ -0
CLN3-255ENST00000637100 ZNF597Q96LX8 424 aa15.04■□□□□ -0
CLN3-255ENST00000637100 CALHM2Q9HA72 323 aa15.04■□□□□ -0
CLN3-255ENST00000637100 CXorf21Q9HAI6 301 aa15.04■□□□□ -0
CLN3-255ENST00000637100 SNX15Q9NRS6 342 aa15.04■□□□□ -0
CLN3-255ENST00000637100 LYARQ9NX58 379 aaKnown RBP15.04■□□□□ -0
CLN3-255ENST00000637100 OPTCQ9UBM4 332 aa15.04■□□□□ -0
CLN3-255ENST00000637100 NPFFR2Q9Y5X5 522 aa15.04■□□□□ -0
CLN3-255ENST00000637100 CAPN14A8MX76 684 aa15.03■□□□□ -0
CLN3-255ENST00000637100 TP53I11O14683 189 aa15.03■□□□□ -0
CLN3-255ENST00000637100 ZSCAN12O43309 604 aa15.03■□□□□ -0
CLN3-255ENST00000637100 TMPRSS11DO60235 418 aa15.03■□□□□ -0
CLN3-255ENST00000637100 UGDHO60701 494 aa15.03■□□□□ -0
CLN3-255ENST00000637100 EEDO75530 441 aaKnown RBP15.03■□□□□ -0
CLN3-255ENST00000637100 IL2RAP01589 272 aa15.03■□□□□ -0
CLN3-255ENST00000637100 GSTA2P09210 222 aa15.03■□□□□ -0
CLN3-255ENST00000637100 FREM3P0C091 2139 aa15.03■□□□□ -0
CLN3-255ENST00000637100 EPB42P16452 691 aa15.03■□□□□ -0
CLN3-255ENST00000637100 CASP3P42574 277 aa15.03■□□□□ -0
CLN3-255ENST00000637100 DEFB113Q30KQ7 82 aa15.03■□□□□ -0
CLN3-255ENST00000637100 ADGRE4PQ86SQ3 457 aa15.03■□□□□ -0
CLN3-255ENST00000637100 KIF18BQ86Y91 864 aa15.03■□□□□ -0
CLN3-255ENST00000637100 KRTAP1-3Q8IUG1 177 aa15.03■□□□□ -0
CLN3-255ENST00000637100 LIX1Q8N485 282 aa15.03■□□□□ -0
CLN3-255ENST00000637100 RHEBL1Q8TAI7 183 aa15.03■□□□□ -0
CLN3-255ENST00000637100 WDR20Q8TBZ3 569 aa15.03■□□□□ -0
CLN3-255ENST00000637100 PYROXD1Q8WU10 500 aa15.03■□□□□ -0
CLN3-255ENST00000637100 HSPBAP1Q96EW2 488 aa15.03■□□□□ -0
CLN3-255ENST00000637100 WDYHV1Q96HA8 205 aa15.03■□□□□ -0
CLN3-255ENST00000637100 TMEM41AQ96HV5 264 aa15.03■□□□□ -0
CLN3-255ENST00000637100 UCN2Q96RP3 112 aa15.03■□□□□ -0
CLN3-255ENST00000637100 ALG9Q9H6U8 611 aa15.03■□□□□ -0
CLN3-255ENST00000637100 NMRAL1Q9HBL8 299 aa15.03■□□□□ -0
CLN3-255ENST00000637100 C15orf41Q9Y2V0 281 aa15.03■□□□□ -0
CLN3-255ENST00000637100 PCDHGA11Q9Y5H2 935 aa15.03■□□□□ -0
CLN3-255ENST00000637100 MPDZO75970 2070 aa15.02■□□□□ -0
CLN3-255ENST00000637100 C2orf92A0A1B0GVN3 265 aa15.02■□□□□ -0
CLN3-255ENST00000637100 FOXE1O00358 373 aaPredicted RBP15.02■□□□□ -0
CLN3-255ENST00000637100 SH3BGRLO75368 114 aa15.02■□□□□ -0
CLN3-255ENST00000637100 PRKRAO75569 313 aaKnown RBP15.02■□□□□ -0
CLN3-255ENST00000637100 FAM58BPP0C7Q3 252 aa15.02■□□□□ -0
CLN3-255ENST00000637100 PCNAP12004 261 aa15.02■□□□□ -0
CLN3-255ENST00000637100 NAGAP17050 411 aa15.02■□□□□ -0
CLN3-255ENST00000637100 S1PR1P21453 382 aa15.02■□□□□ -0
CLN3-255ENST00000637100 TACR1P25103 407 aa15.02■□□□□ -0
CLN3-255ENST00000637100 CTSSP25774 331 aa15.02■□□□□ -0
CLN3-255ENST00000637100 GDF1P27539 372 aa15.02■□□□□ -0
CLN3-255ENST00000637100 SPRP35270 261 aaPredicted RBP15.02■□□□□ -0
CLN3-255ENST00000637100 GMPRP36959 345 aa15.02■□□□□ -0
CLN3-255ENST00000637100 WNT3P56703 355 aa15.02■□□□□ -0
CLN3-255ENST00000637100 GPX6P59796 221 aa15.02■□□□□ -0
CLN3-255ENST00000637100 GRTP1Q5TC63 336 aa15.02■□□□□ -0
CLN3-255ENST00000637100 BIVMQ86UB2 503 aa15.02■□□□□ -0
CLN3-255ENST00000637100 L3MBTL4Q8NA19 623 aa15.02■□□□□ -0
CLN3-255ENST00000637100 ZPLD1Q8TCW7 415 aa15.02■□□□□ -0
CLN3-255ENST00000637100 DIO2Q92813 273 aa15.02■□□□□ -0
CLN3-255ENST00000637100 RILPQ96NA2 401 aa15.02■□□□□ -0
CLN3-255ENST00000637100 CENPKQ9BS16 269 aa15.02■□□□□ -0
CLN3-255ENST00000637100 UGT2B28Q9BY64 529 aa15.02■□□□□ -0
CLN3-255ENST00000637100 SNX24Q9Y343 169 aa15.02■□□□□ -0
CLN3-255ENST00000637100 C15orf38-AP3S2A0A0A6YYH1 394 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 TUBAL3A6NHL2 446 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 UBXN8O00124 270 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 CDH16O75309 829 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 ACSL3O95573 720 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 S100BP04271 92 aaPredicted RBP15.01□□□□□ -0.01
CLN3-255ENST00000637100 CPN1P15169 458 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 BMP7P18075 431 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 PTPN6P29350 595 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 OPRM1P35372 400 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 PCYT1AP49585 367 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 DGKQP52824 942 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 FBXW4P57775 412 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 RPS13P62277 151 aaKnown RBP15.01□□□□□ -0.01
CLN3-255ENST00000637100 SETDB1Q15047 1291 aa15.01□□□□□ -0.01
CLN3-255ENST00000637100 PCBP2Q15366 365 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-255ENST00000637100 BICRALQ6AI39 1079 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms